Variant report

Variant	rs4757767
Chromosome Location	chr11:19202126-19202127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:19196229..19199925-chr11:19201416..19205445,7	K562	blood:
2	chr11:19197587..19200581-chr11:19200823..19203597,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11606142	0.85[CHB][hapmap]
rs11823088	0.89[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap]
rs4757763	1.00[CHB][hapmap]
rs4757764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19162800-19203000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:19166400-19203000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:19172200-19208600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:19174000-19209000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:19176400-19213400	Weak transcription	Psoas Muscle	Psoas
6	chr11:19187200-19205800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:19187200-19208200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:19194600-19202800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:19194600-19209600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:19194600-19213400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:19195200-19208800	Weak transcription	HMEC	breast
12	chr11:19195200-19209400	Weak transcription	Brain Germinal Matrix	brain
13	chr11:19195600-19207600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:19195600-19208800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:19195800-19202200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:19195800-19211000	Weak transcription	Esophagus	oesophagus
17	chr11:19196000-19204400	Weak transcription	Fetal Stomach	stomach
18	chr11:19196200-19202600	Weak transcription	K562	blood
19	chr11:19196200-19203200	Weak transcription	Thymus	Thymus
20	chr11:19196200-19203400	Weak transcription	Spleen	Spleen
21	chr11:19196200-19213200	Weak transcription	Fetal Intestine Small	intestine
22	chr11:19196200-19213200	Weak transcription	Pancreas	Pancrea
23	chr11:19196400-19203400	Weak transcription	Aorta	Aorta
24	chr11:19196400-19205200	Weak transcription	Fetal Kidney	kidney
25	chr11:19196400-19208600	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:19196400-19208800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:19196400-19209000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr11:19197200-19202800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:19197600-19203200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:19197600-19203800	Weak transcription	Fetal Thymus	thymus
31	chr11:19197800-19209000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr11:19198600-19202600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:19198600-19202600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:19198800-19202400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:19198800-19203200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:19198800-19203400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr11:19198800-19204200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:19198800-19205000	Weak transcription	Right Ventricle	heart
39	chr11:19198800-19208800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr11:19199000-19203000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:19199000-19203200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:19199000-19203200	Weak transcription	GM12878-XiMat	blood
43	chr11:19199000-19203400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:19199000-19203800	Weak transcription	Adipose Nuclei	Adipose
45	chr11:19199000-19203800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:19199000-19205000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:19199000-19208600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:19199000-19209000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:19199000-19209600	Weak transcription	Brain Anterior Caudate	brain
50	chr11:19199000-19212800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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