Variant report

Variant	rs4758855
Chromosome Location	chr12:60552677-60552678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10784027	0.83[AMR][1000 genomes]
rs10784028	0.92[AMR][1000 genomes]
rs10784029	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10784033	0.84[AMR][1000 genomes]
rs10877398	0.86[AMR][1000 genomes]
rs10877399	0.84[AMR][1000 genomes]
rs10877401	0.86[AMR][1000 genomes]
rs10877402	0.86[AMR][1000 genomes]
rs10877403	0.83[AMR][1000 genomes]
rs10877406	0.86[AMR][1000 genomes]
rs11173319	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11173338	0.90[AMR][1000 genomes]
rs11173357	0.86[AMR][1000 genomes]
rs11173365	0.86[AMR][1000 genomes]
rs11173371	0.82[AMR][1000 genomes]
rs11173387	0.80[AMR][1000 genomes]
rs12830074	0.82[AMR][1000 genomes]
rs1304313	0.80[AMR][1000 genomes]
rs1354469	0.82[AMR][1000 genomes]
rs1389255	0.92[AMR][1000 genomes]
rs1389256	0.80[AMR][1000 genomes]
rs1493311	0.86[AMR][1000 genomes]
rs1493318	0.80[AMR][1000 genomes]
rs1504444	0.85[AMR][1000 genomes]
rs1587821	0.80[AMR][1000 genomes]
rs2014074	0.92[AMR][1000 genomes]
rs2134882	0.85[AMR][1000 genomes]
rs2172500	0.84[AMR][1000 genomes]
rs35713358	0.85[AMR][1000 genomes]
rs3847662	0.92[AMR][1000 genomes]
rs3847663	0.81[CEU][hapmap];0.92[AMR][1000 genomes]
rs3907482	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4093759	0.90[AMR][1000 genomes]
rs4254103	0.85[AMR][1000 genomes]
rs4366523	0.85[AMR][1000 genomes]
rs4406858	0.86[AMR][1000 genomes]
rs4625509	0.86[AMR][1000 genomes]
rs4758858	0.84[AMR][1000 genomes]
rs7134663	0.92[AMR][1000 genomes]
rs7136435	0.82[AMR][1000 genomes]
rs7138854	0.85[AMR][1000 genomes]
rs7297548	0.82[AMR][1000 genomes]
rs7298315	0.92[AMR][1000 genomes]
rs7300532	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7302607	0.82[AMR][1000 genomes]
rs7313364	0.82[AMR][1000 genomes]
rs7961221	0.83[AMR][1000 genomes]
rs7961816	0.80[AMR][1000 genomes]
rs7967860	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7973156	0.80[AMR][1000 genomes]
rs7977065	0.90[AMR][1000 genomes]
rs958543	0.83[AMR][1000 genomes]
rs992478	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427913	chr12:60462443-60569344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2760273	chr12:60489188-60561925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60548200-60558200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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