Variant report

Variant	rs4759251
Chromosome Location	chr12:56954109-56954110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10783792	0.95[ASN][1000 genomes]
rs10876910	0.95[ASN][1000 genomes]
rs12302233	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2888045	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3759091	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7133264	0.92[ASN][1000 genomes]
rs7304944	0.95[ASN][1000 genomes]
rs7305370	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043622	chr12:56571476-56974448	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	nsv541500	chr12:56571476-56974448	Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
3	nsv899106	chr12:56905558-57004668	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4759251	SPRYD4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56917000-56958000	Weak transcription	Ovary	ovary
2	chr12:56917200-56956200	Weak transcription	Primary T cells from cord blood	blood
3	chr12:56917200-56959200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:56921400-56956200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr12:56922400-56956200	Weak transcription	HSMM	muscle
6	chr12:56922400-56959200	Weak transcription	Fetal Kidney	kidney
7	chr12:56923800-56959400	Weak transcription	Aorta	Aorta
8	chr12:56924800-56959200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:56925000-56959200	Weak transcription	HSMMtube	muscle
10	chr12:56929800-56955600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:56931400-56956800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr12:56931400-56959400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr12:56931600-56954800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr12:56931600-56955800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr12:56931600-56956200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr12:56931600-56965000	Weak transcription	Hela-S3	cervix
17	chr12:56931800-56956400	Weak transcription	NHLF	lung
18	chr12:56932200-56959200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr12:56933200-56959000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr12:56933200-56959200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:56933400-56959200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr12:56933600-56956000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr12:56933600-56956200	Weak transcription	NH-A	brain
24	chr12:56934600-56955800	Weak transcription	Osteobl	bone
25	chr12:56934800-56955800	Weak transcription	HUVEC	blood vessel
26	chr12:56935600-56959200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr12:56936200-56956000	Weak transcription	Fetal Lung	lung
28	chr12:56936200-56956200	Weak transcription	Small Intestine	intestine
29	chr12:56937200-56959200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr12:56939600-56956000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr12:56939600-56957800	Weak transcription	HMEC	breast
32	chr12:56941000-56956200	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr12:56945400-56956800	Weak transcription	Colon Smooth Muscle	Colon
34	chr12:56946200-56956200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr12:56946400-56955800	Weak transcription	A549	lung
36	chr12:56946400-56956000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr12:56946400-56956200	Weak transcription	Adipose Nuclei	Adipose
38	chr12:56946600-56959200	Weak transcription	Spleen	Spleen
39	chr12:56947000-56958000	Weak transcription	Lung	lung
40	chr12:56947200-56956000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr12:56947200-56956400	Weak transcription	Left Ventricle	heart
42	chr12:56947200-56959200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr12:56947600-56956200	Weak transcription	Gastric	stomach
44	chr12:56947800-56956000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr12:56948200-56959200	Weak transcription	Colonic Mucosa	Colon
46	chr12:56948600-56981200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr12:56949000-56956000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr12:56949800-56956200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr12:56950000-56959600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr12:56950800-56955800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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