Variant report

Variant	rs4759256
Chromosome Location	chr12:57155256-57155257
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:57151760..57156015-chr12:57398737..57401426,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166860	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1026565	0.94[ASN][1000 genomes]
rs10459246	0.89[ASN][1000 genomes]
rs10459247	0.85[EUR][1000 genomes]
rs10747770	0.96[ASN][1000 genomes]
rs10783796	0.90[ASN][1000 genomes]
rs10876918	0.94[ASN][1000 genomes]
rs11171951	0.90[ASN][1000 genomes]
rs11171956	0.88[ASN][1000 genomes]
rs1131514	0.94[ASN][1000 genomes]
rs11837319	0.80[AMR][1000 genomes]
rs12227117	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12828563	0.89[ASN][1000 genomes]
rs1466382	0.90[ASN][1000 genomes]
rs1975875	0.94[ASN][1000 genomes]
rs1979325	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2035081	0.90[ASN][1000 genomes]
rs2035082	0.90[ASN][1000 genomes]
rs2290894	0.90[ASN][1000 genomes]
rs2926741	0.87[ASN][1000 genomes]
rs2926743	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2926747	0.86[ASN][1000 genomes]
rs2926748	0.90[ASN][1000 genomes]
rs2958127	0.90[ASN][1000 genomes]
rs2958130	0.94[ASN][1000 genomes]
rs2958132	0.94[ASN][1000 genomes]
rs2958134	0.87[ASN][1000 genomes]
rs2958145	0.80[AMR][1000 genomes]
rs2958148	0.88[ASN][1000 genomes]
rs2958149	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2958153	0.91[AMR][1000 genomes]
rs3214051	0.87[ASN][1000 genomes]
rs4788	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902	0.90[ASN][1000 genomes]
rs7137749	0.83[ASN][1000 genomes]
rs7295862	0.88[ASN][1000 genomes]
rs7313074	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7966391	0.91[ASN][1000 genomes]
rs7967600	0.96[ASN][1000 genomes]
rs7978685	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7980317	0.96[ASN][1000 genomes]
rs898609	0.90[ASN][1000 genomes]
rs898611	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
2	esv1794914	chr12:57119236-57195379	Active TSS Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv826382	chr12:57151464-57208607	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57146400-57160400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:57152200-57161800	Weak transcription	Pancreas	Pancrea
3	chr12:57153800-57155800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr12:57153800-57158000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:57154600-57159200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:57155000-57155400	Weak transcription	HepG2	liver
7	chr12:57155000-57156200	Enhancers	Liver	Liver

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