Variant report

Variant	rs4760334
Chromosome Location	chr12:58235598-58235599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:58234242..58236619-chr12:58259394..58262193,2	MCF-7	breast:
2	chr12:58234916..58238373-chr12:58245193..58248613,3	K562	blood:
3	chr12:58233748..58235747-chr12:58295225..58296779,2	MCF-7	breast:
4	chr12:58233992..58236447-chr12:58297834..58300424,2	K562	blood:
5	chr12:58233944..58243826-chr12:58273095..58290464,46	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245651	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17119801	1.00[AMR][1000 genomes]
rs34987074	1.00[AMR][1000 genomes]
rs7976556	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559046	chr12:58162085-58478598	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	261 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58223400-58236400	Enhancers	Right Ventricle	heart
2	chr12:58224200-58238200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:58224400-58238000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:58224400-58238200	Enhancers	Spleen	Spleen
5	chr12:58225200-58237000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr12:58225400-58235600	Genic enhancers	Fetal Intestine Small	intestine
7	chr12:58225600-58238200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:58225800-58236000	Enhancers	Brain Angular Gyrus	brain
9	chr12:58226400-58236200	Enhancers	Left Ventricle	heart
10	chr12:58226600-58235600	Enhancers	Lung	lung
11	chr12:58226600-58236200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr12:58226600-58236200	Enhancers	Psoas Muscle	Psoas
13	chr12:58226600-58236400	Enhancers	Pancreas	Pancrea
14	chr12:58226800-58237800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr12:58227000-58236400	Enhancers	Gastric	stomach
16	chr12:58227200-58238200	Enhancers	Small Intestine	intestine
17	chr12:58229200-58238400	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr12:58229600-58236600	Enhancers	Stomach Mucosa	stomach
19	chr12:58229800-58236800	Enhancers	HSMM	muscle
20	chr12:58230600-58236200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr12:58230600-58236400	Enhancers	Primary B cells from peripheral blood	blood
22	chr12:58230600-58236600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr12:58230800-58236200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr12:58231000-58236000	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr12:58231000-58236000	Enhancers	Right Atrium	heart
26	chr12:58231000-58236200	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr12:58231000-58236400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr12:58231000-58237600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr12:58231200-58235800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr12:58231200-58236200	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr12:58231200-58236200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr12:58231200-58236200	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr12:58231200-58236400	Enhancers	Liver	Liver
34	chr12:58231600-58236200	Genic enhancers	Fetal Thymus	thymus
35	chr12:58231800-58236200	Genic enhancers	Fetal Stomach	stomach
36	chr12:58231800-58237400	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr12:58232000-58235800	Enhancers	Primary hematopoietic stem cells	blood
38	chr12:58232000-58236000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr12:58232400-58236000	Enhancers	Osteobl	bone
40	chr12:58232400-58236200	Genic enhancers	Fetal Muscle Leg	muscle
41	chr12:58232600-58235800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr12:58232600-58236200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr12:58232600-58236400	Enhancers	Fetal Brain Male	brain
44	chr12:58232600-58238200	Enhancers	HUVEC	blood vessel
45	chr12:58233000-58236000	Enhancers	Thymus	Thymus
46	chr12:58233000-58236200	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr12:58233000-58236200	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr12:58233000-58236200	Enhancers	Fetal Intestine Large	intestine
49	chr12:58233000-58236200	Enhancers	Fetal Kidney	kidney
50	chr12:58233000-58236400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links