Variant report

Variant	rs4760596
Chromosome Location	chr12:75858695-75858696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10506669	0.91[ASN][1000 genomes]
rs11180480	0.80[ASN][1000 genomes]
rs11180499	0.91[ASN][1000 genomes]
rs11180552	0.83[ASN][1000 genomes]
rs11355	0.83[ASN][1000 genomes]
rs11540407	0.83[ASN][1000 genomes]
rs11609405	0.97[ASN][1000 genomes]
rs11609538	0.91[ASN][1000 genomes]
rs11610755	0.80[ASN][1000 genomes]
rs11611121	0.91[ASN][1000 genomes]
rs11611609	0.83[ASN][1000 genomes]
rs11612665	1.00[ASN][1000 genomes]
rs11614719	0.80[ASN][1000 genomes]
rs11829445	0.80[ASN][1000 genomes]
rs11829975	0.94[ASN][1000 genomes]
rs12423560	0.91[ASN][1000 genomes]
rs12423750	0.94[ASN][1000 genomes]
rs12424262	0.88[ASN][1000 genomes]
rs12424458	0.80[ASN][1000 genomes]
rs12424779	0.80[ASN][1000 genomes]
rs12425122	0.99[ASN][1000 genomes]
rs12580524	0.94[ASN][1000 genomes]
rs12811343	0.80[ASN][1000 genomes]
rs12812559	0.83[ASN][1000 genomes]
rs12815116	0.83[ASN][1000 genomes]
rs12817746	0.94[ASN][1000 genomes]
rs12819511	0.83[ASN][1000 genomes]
rs12821144	0.91[ASN][1000 genomes]
rs12822366	1.00[ASN][1000 genomes]
rs12822505	1.00[ASN][1000 genomes]
rs12826635	0.83[ASN][1000 genomes]
rs12827668	0.83[ASN][1000 genomes]
rs12833944	0.94[ASN][1000 genomes]
rs1501634	0.83[ASN][1000 genomes]
rs15513	0.83[ASN][1000 genomes]
rs1552039	0.83[ASN][1000 genomes]
rs1604381	0.83[ASN][1000 genomes]
rs17217158	0.96[ASN][1000 genomes]
rs17218895	0.83[ASN][1000 genomes]
rs17818307	0.83[ASN][1000 genomes]
rs1909977	0.91[ASN][1000 genomes]
rs2070162	0.83[ASN][1000 genomes]
rs2134140	0.89[ASN][1000 genomes]
rs2202105	1.00[ASN][1000 genomes]
rs2279244	0.83[ASN][1000 genomes]
rs2306391	0.83[ASN][1000 genomes]
rs34508642	1.00[ASN][1000 genomes]
rs34722118	0.80[ASN][1000 genomes]
rs35124104	0.99[ASN][1000 genomes]
rs35244242	1.00[ASN][1000 genomes]
rs35351465	1.00[ASN][1000 genomes]
rs35619460	0.83[ASN][1000 genomes]
rs36113316	0.94[ASN][1000 genomes]
rs3741495	0.83[ASN][1000 genomes]
rs3809118	0.96[ASN][1000 genomes]
rs3809121	0.83[ASN][1000 genomes]
rs4019356	0.94[ASN][1000 genomes]
rs4420306	1.00[ASN][1000 genomes]
rs4882626	0.94[ASN][1000 genomes]
rs55742134	0.80[ASN][1000 genomes]
rs55783970	0.80[ASN][1000 genomes]
rs61932180	0.80[ASN][1000 genomes]
rs61932935	0.82[ASN][1000 genomes]
rs61933361	0.80[ASN][1000 genomes]
rs61933362	0.83[ASN][1000 genomes]
rs66864793	0.80[ASN][1000 genomes]
rs7489329	0.80[ASN][1000 genomes]
rs7961005	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492067	chr12:75415458-76077537	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1036987	chr12:75415532-76101559	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv899313	chr12:75715330-76057811	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1040583	chr12:75742802-76360276	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv428592	chr12:75766619-75936721	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv948653	chr12:75773464-76220618	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv1006356	chr12:75856842-75860090	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:75851400-75867800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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