Variant report

Variant	rs4761843
Chromosome Location	chr12:51713586-51713587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:51662271..51665038-chr12:51711816..51714647,2	K562	blood:
2	chr12:51712710..51716828-chr12:51719754..51724043,5	K562	blood:
3	chr12:51712171..51715020-chr12:51716929..51719322,2	MCF-7	breast:
4	chr12:51710356..51713645-chr12:51720668..51723733,3	MCF-7	breast:
5	chr12:51438469..51440828-chr12:51713413..51715859,2	K562	blood:
6	chr12:51712710..51714894-chr12:51720855..51723845,2	K562	blood:
7	chr12:51711614..51713649-chr12:51717595..51720052,2	MCF-7	breast:
8	chr12:51712004..51713863-chr12:51716596..51718189,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000110934	Chromatin interaction
ENSG00000170545	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10876160	0.85[EUR][1000 genomes]
rs12228390	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1820617	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2288368	1.00[CEU][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs3843650	0.96[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4435047	0.81[EUR][1000 genomes]
rs4762035	0.90[EUR][1000 genomes]
rs4762040	1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs4762042	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs5029067	0.84[EUR][1000 genomes]
rs6580824	0.83[EUR][1000 genomes]
rs7955476	0.85[EUR][1000 genomes]
rs7955688	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482304	chr12:51653496-51814917	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv469377	chr12:51690751-51733951	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv558877	chr12:51690751-51733951	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv832408	chr12:51696605-51871339	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51681800-51714200	Weak transcription	Gastric	stomach
2	chr12:51708800-51716600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr12:51711200-51716800	Enhancers	Placenta	Placenta
4	chr12:51711800-51715200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr12:51711800-51721800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:51712000-51713800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr12:51712000-51714400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr12:51712000-51717600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr12:51712200-51714800	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr12:51712200-51715600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr12:51712200-51716400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr12:51712400-51713600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr12:51712400-51713600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr12:51712400-51713600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr12:51712400-51713800	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr12:51712400-51714600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr12:51712400-51714600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr12:51712400-51716200	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr12:51712400-51717400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr12:51712600-51713600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr12:51712600-51713600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr12:51712600-51714200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:51712600-51714200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr12:51712600-51714600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr12:51712600-51715200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:51712600-51715600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr12:51712800-51714000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr12:51712800-51714200	Weak transcription	HSMMtube	muscle
29	chr12:51712800-51714200	Enhancers	K562	blood
30	chr12:51712800-51714400	Weak transcription	Fetal Lung	lung
31	chr12:51712800-51715000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr12:51712800-51720200	Weak transcription	HMEC	breast
33	chr12:51713000-51714000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr12:51713000-51714000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr12:51713000-51714200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr12:51713000-51714400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr12:51713000-51714400	Enhancers	Fetal Thymus	thymus
38	chr12:51713000-51714600	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr12:51713200-51713600	Active TSS	Primary T cells fromperipheralblood	blood
40	chr12:51713200-51713800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr12:51713200-51714200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr12:51713200-51714200	Enhancers	Primary hematopoietic stem cells	blood
43	chr12:51713200-51714200	Weak transcription	Stomach Mucosa	stomach
44	chr12:51713200-51714200	Weak transcription	Hela-S3	cervix
45	chr12:51713200-51714400	Weak transcription	Colonic Mucosa	Colon
46	chr12:51713200-51714400	Enhancers	Thymus	Thymus
47	chr12:51713200-51714600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr12:51713200-51714600	Enhancers	Dnd41	blood
49	chr12:51713200-51714800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr12:51713200-51714800	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links