Variant report

Variant	rs476216
Chromosome Location	chr2:30952490-30952491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1252309	0.80[ASN][1000 genomes]
rs1252311	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13388696	0.81[CHB][hapmap]
rs2013768	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2276567	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2681682	0.82[CHB][hapmap]
rs2681683	0.82[CHB][hapmap]
rs482384	0.85[CEU][hapmap]
rs482528	0.93[CEU][hapmap];0.81[AMR][1000 genomes]
rs485100	0.85[CEU][hapmap]
rs486803	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs509380	0.81[CEU][hapmap]
rs540532	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9309682	0.83[CHB][hapmap]
rs9309683	0.83[CHB][hapmap]
rs9309684	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30902400-30954000	Weak transcription	Gastric	stomach
2	chr2:30940600-30969600	Weak transcription	Stomach Mucosa	stomach
3	chr2:30945800-30955400	Weak transcription	Fetal Intestine Small	intestine
4	chr2:30946800-30953200	Weak transcription	Fetal Stomach	stomach
5	chr2:30947400-30953000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr2:30950000-30954200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr2:30951400-30954000	Strong transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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