Variant report

Variant	rs4762883
Chromosome Location	chr12:22271794-22271795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10770889	1.00[AMR][1000 genomes]
rs2080555	1.00[AMR][1000 genomes]
rs2098439	1.00[AMR][1000 genomes]
rs2193383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2909074	1.00[AMR][1000 genomes]
rs2909081	1.00[AMR][1000 genomes]
rs2955493	1.00[AMR][1000 genomes]
rs4762731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4762884	1.00[AMR][1000 genomes]
rs4762885	1.00[AMR][1000 genomes]
rs6487283	1.00[AMR][1000 genomes]
rs6487284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7294698	1.00[AMR][1000 genomes]
rs7297003	1.00[AMR][1000 genomes]
rs7308269	1.00[AMR][1000 genomes]
rs7316435	1.00[AMR][1000 genomes]
rs7486136	1.00[AMR][1000 genomes]
rs759585	1.00[AMR][1000 genomes]
rs975238	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758298	chr12:22140834-22339299	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2759883	chr12:22140834-22736907	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:22268600-22272000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:22269200-22272400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr12:22271000-22272600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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