Variant report

Variant	rs4762936
Chromosome Location	chr12:20361033-20361034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11045115	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11836891	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12424077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12425361	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12579988	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12580294	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12582945	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57055266	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9669759	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035141	chr12:20286595-20429040	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv557700	chr12:20346383-20379710	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv898857	chr12:20359670-20423727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:20356000-20364600	Weak transcription	Aorta	Aorta
2	chr12:20356400-20365400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr12:20356600-20364600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr12:20358400-20364200	Weak transcription	Fetal Intestine Small	intestine
5	chr12:20359400-20364000	Weak transcription	A549	lung
6	chr12:20359400-20364200	Weak transcription	Fetal Intestine Large	intestine
7	chr12:20359600-20364400	Weak transcription	Colon Smooth Muscle	Colon
8	chr12:20359600-20364600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr12:20359800-20363400	Weak transcription	Hela-S3	cervix
10	chr12:20359800-20364000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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