Variant report

Variant	rs476663
Chromosome Location	chr3:150449883-150449884
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150445560..150447651-chr3:150448542..150450591,2	MCF-7	breast:
2	chr3:150449820..150452508-chr3:150479862..150482648,4	K562	blood:
3	chr3:150449600..150451451-chr3:150461604..150463248,2	MCF-7	breast:
4	chr3:150449791..150453661-chr3:150454357..150457851,6	K562	blood:
5	chr3:150349271..150351957-chr3:150449849..150451652,2	K562	blood:
6	chr3:150445895..150450049-chr3:150452463..150456405,5	MCF-7	breast:
7	chr3:150447605..150450016-chr3:150452187..150453951,2	K562	blood:
8	chr3:150443385..150447273-chr3:150447378..150454336,8	K562	blood:
9	chr3:150261794..150264115-chr3:150447439..150450036,2	K562	blood:
10	chr3:150448693..150451587-chr3:150464289..150466190,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000181788	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17281287	0.84[JPT][hapmap]
rs2869477	0.84[CEU][hapmap]
rs502941	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs594926	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs6789306	0.81[JPT][hapmap]
rs7615125	0.81[JPT][hapmap]
rs7615292	0.81[JPT][hapmap]
rs7636866	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150423200-150451600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:150429200-150457600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:150430000-150455000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:150430800-150454000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:150439800-150457600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:150439800-150459000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:150442200-150455200	Weak transcription	Thymus	Thymus
8	chr3:150443200-150457800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:150443600-150451200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:150443800-150454200	Weak transcription	Fetal Intestine Large	intestine
11	chr3:150444000-150457600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr3:150445000-150455000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:150445200-150451000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:150445200-150453800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:150445800-150451200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:150445800-150451200	Weak transcription	Gastric	stomach
17	chr3:150446000-150454200	Weak transcription	Adipose Nuclei	Adipose
18	chr3:150446000-150455800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:150446000-150458600	Weak transcription	Brain Substantia Nigra	brain
20	chr3:150446200-150451000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:150446200-150451200	Weak transcription	Placenta	Placenta
22	chr3:150446200-150451200	Weak transcription	Right Atrium	heart
23	chr3:150446200-150451600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:150446200-150451600	Weak transcription	HMEC	breast
25	chr3:150446200-150455400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:150446200-150458400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr3:150446400-150451000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:150446400-150451000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:150446600-150451200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:150446800-150451000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:150446800-150451000	Weak transcription	NHEK	skin
32	chr3:150446800-150455000	Weak transcription	Fetal Intestine Small	intestine
33	chr3:150448000-150451000	Weak transcription	HepG2	liver
34	chr3:150448000-150451200	Weak transcription	Liver	Liver
35	chr3:150448000-150457600	Weak transcription	Aorta	Aorta
36	chr3:150448200-150451000	Enhancers	K562	blood
37	chr3:150448200-150451200	Weak transcription	Left Ventricle	heart
38	chr3:150448800-150451000	Weak transcription	Fetal Heart	heart
39	chr3:150449400-150458400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr3:150449800-150450200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links