Variant report

Variant	rs4767577
Chromosome Location	chr12:118041729-118041730
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11068568	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1400592	0.82[EUR][1000 genomes]
rs1517199	0.82[EUR][1000 genomes]
rs1517200	0.82[EUR][1000 genomes]
rs1878418	0.81[EUR][1000 genomes]
rs4767569	0.81[EUR][1000 genomes]
rs7960857	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118037200-118044600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:118038400-118045200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:118041000-118042000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr12:118041000-118042000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr12:118041000-118042000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr12:118041200-118041800	Enhancers	HUVEC	blood vessel
7	chr12:118041200-118042000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:118041200-118042000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr12:118041200-118042000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr12:118041200-118042400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr12:118041200-118042400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr12:118041400-118042000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr12:118041400-118042400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr12:118041600-118041800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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