Variant report

Variant	rs4767964
Chromosome Location	chr12:40592268-40592269
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10506143	1.00[EUR][1000 genomes]
rs10506146	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10506147	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs11175593	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs11564107	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11564108	1.00[EUR][1000 genomes]
rs11564117	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11564131	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11564190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11564212	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11564214	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11564218	1.00[EUR][1000 genomes]
rs12422544	0.86[ASN][1000 genomes]
rs12423419	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12423551	1.00[EUR][1000 genomes]
rs12424294	1.00[EUR][1000 genomes]
rs12425561	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12425630	1.00[EUR][1000 genomes]
rs12426643	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12427022	1.00[EUR][1000 genomes]
rs1373442	1.00[EUR][1000 genomes]
rs1388585	0.86[ASN][1000 genomes]
rs1388597	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1491945	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17458808	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17461387	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17461575	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17461692	1.00[EUR][1000 genomes]
rs17465610	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17483919	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17484003	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17484141	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2131081	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28365206	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34567498	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4767962	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4767965	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044685	chr12:40574460-40771612	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40590200-40595400	Weak transcription	Primary B cells from cord blood	blood
2	chr12:40590400-40595200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr12:40590400-40595600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr12:40590400-40596600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr12:40591000-40595600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr12:40591600-40594600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr12:40592200-40595200	Weak transcription	Monocytes-CD14+_RO01746	blood

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