Variant report

Variant	rs4768059
Chromosome Location	chr12:44375756-44375757
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10748385	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10880609	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7298890	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7302394	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7311269	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44343600-44376800	Weak transcription	Pancreas	Pancrea
2	chr12:44361400-44401400	Weak transcription	Aorta	Aorta
3	chr12:44363800-44382400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:44364600-44393200	Weak transcription	Small Intestine	intestine
5	chr12:44364800-44377000	Weak transcription	Left Ventricle	heart
6	chr12:44374800-44375800	Enhancers	HepG2	liver
7	chr12:44374800-44377400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:44375600-44376200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:44375600-44376400	Enhancers	Brain Anterior Caudate	brain
10	chr12:44375600-44376600	Weak transcription	Stomach Mucosa	stomach
11	chr12:44375600-44378600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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