Variant report

Variant	rs4768200
Chromosome Location	chr12:40335410-40335411
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1005956	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10506140	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10747971	0.81[JPT][hapmap]
rs10784338	0.90[JPT][hapmap]
rs10784353	0.90[JPT][hapmap]
rs10784356	0.90[JPT][hapmap]
rs10784359	0.90[JPT][hapmap]
rs10784369	0.90[JPT][hapmap]
rs10877891	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10877990	0.90[JPT][hapmap]
rs10878049	0.90[JPT][hapmap]
rs10878089	0.90[JPT][hapmap]
rs11174478	1.00[ASN][1000 genomes]
rs11174609	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs11175024	0.90[JPT][hapmap]
rs12813098	0.90[JPT][hapmap]
rs12823555	0.90[JPT][hapmap]
rs1482281	0.82[JPT][hapmap]
rs1586038	0.90[JPT][hapmap]
rs1600866	0.90[JPT][hapmap]
rs17560847	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1813122	0.82[JPT][hapmap]
rs2128277	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs2404352	0.90[JPT][hapmap]
rs2896825	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs3925535	0.90[JPT][hapmap]
rs4625545	0.82[CHB][hapmap]
rs4767956	0.85[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768204	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs530602	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs550669	0.82[JPT][hapmap]
rs6581504	0.90[JPT][hapmap]
rs6650226	0.82[JPT][hapmap]
rs716268	0.90[JPT][hapmap]
rs7313209	0.90[JPT][hapmap]
rs7313231	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7953129	0.90[JPT][hapmap]
rs7959498	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs7960662	0.90[JPT][hapmap]
rs7964150	0.81[JPT][hapmap]
rs7970812	0.82[CHB][hapmap]
rs9669240	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052202	chr12:40322607-40406760	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40323600-40337800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr12:40329600-40339800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:40330000-40340000	Weak transcription	Ovary	ovary
4	chr12:40334000-40343000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr12:40334200-40343600	Weak transcription	Rectal Mucosa Donor 31	rectum

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