Variant report

Variant	rs4768361
Chromosome Location	chr12:42016069-42016070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11181054	1.00[EUR][1000 genomes]
rs11181058	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11181061	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11181074	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12228649	0.84[EUR][1000 genomes]
rs1979749	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs287008	0.85[ASN][1000 genomes]
rs287009	0.85[ASN][1000 genomes]
rs58741051	0.80[ASN][1000 genomes]
rs73118189	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73124212	0.80[ASN][1000 genomes]
rs7978317	1.00[EUR][1000 genomes]
rs903669	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899041	chr12:42005690-42072514	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42013200-42016400	Enhancers	Fetal Intestine Small	intestine
2	chr12:42014000-42019200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr12:42014800-42018400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr12:42015200-42018200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:42015200-42020600	Weak transcription	Brain Germinal Matrix	brain
6	chr12:42015400-42018400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr12:42015600-42016400	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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