Variant report

Variant	rs4768471
Chromosome Location	chr12:39325960-39325961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11610886	0.81[EUR][1000 genomes]
rs11831499	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11831502	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12812262	0.80[EUR][1000 genomes]
rs12813151	0.81[EUR][1000 genomes]
rs12816546	0.81[EUR][1000 genomes]
rs12827197	0.81[EUR][1000 genomes]
rs1349257	0.81[EUR][1000 genomes]
rs1562728	0.81[EUR][1000 genomes]
rs1878228	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2218762	0.81[EUR][1000 genomes]
rs2388174	0.81[EUR][1000 genomes]
rs2388175	0.81[EUR][1000 genomes]
rs2388178	0.81[EUR][1000 genomes]
rs2388179	0.81[EUR][1000 genomes]
rs2892450	0.81[EUR][1000 genomes]
rs2892451	0.81[EUR][1000 genomes]
rs3914597	0.81[EUR][1000 genomes]
rs4254106	0.81[EUR][1000 genomes]
rs4411311	0.81[EUR][1000 genomes]
rs4438082	0.81[EUR][1000 genomes]
rs4768473	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131749	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7137139	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7308161	0.81[EUR][1000 genomes]
rs7308278	0.81[EUR][1000 genomes]
rs7952765	0.81[EUR][1000 genomes]
rs7953715	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7958118	0.81[EUR][1000 genomes]
rs7967295	0.81[EUR][1000 genomes]
rs7968566	0.81[EUR][1000 genomes]
rs7970850	0.81[EUR][1000 genomes]
rs7972590	0.81[EUR][1000 genomes]
rs7976609	0.81[EUR][1000 genomes]
rs925827	0.81[EUR][1000 genomes]
rs925828	0.81[EUR][1000 genomes]
rs925829	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3389115	chr12:39221256-39448458	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv899009	chr12:39284077-39441096	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2761733	chr12:39309714-39413045	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39325000-39327400	Weak transcription	K562	blood

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