Variant report

Variant	rs4768845
Chromosome Location	chr12:39861945-39861946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11171717	1.00[YRI][hapmap]
rs11829551	1.00[YRI][hapmap]
rs11833656	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531527	chr12:39680812-40182822	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1044049	chr12:39845078-39922808	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1051709	chr12:39846990-39899051	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39860600-39862400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr12:39860800-39862400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:39860800-39862600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr12:39861000-39862200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr12:39861200-39862000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
6	chr12:39861200-39862000	Flanking Active TSS	GM12878-XiMat	blood
7	chr12:39861400-39862000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr12:39861600-39862000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr12:39861800-39862000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr12:39861800-39862000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr12:39861800-39862200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr12:39861800-39862600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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