Variant report

Variant	rs476903
Chromosome Location	chr6:72221973-72221974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1486596	0.89[CEU][hapmap]
rs169210	0.89[CEU][hapmap]
rs182106	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs199621	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs199623	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs199624	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs199625	0.80[EUR][1000 genomes]
rs199630	0.89[CEU][hapmap]
rs199632	0.89[CEU][hapmap]
rs199647	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591809	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72220000-72222200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:72220200-72222000	Weak transcription	Psoas Muscle	Psoas
3	chr6:72220200-72222000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:72220200-72222200	Weak transcription	Aorta	Aorta
5	chr6:72220400-72222000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:72220600-72222800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:72220800-72222000	Weak transcription	HSMM	muscle
8	chr6:72220800-72222200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:72221600-72222200	Enhancers	Fetal Muscle Leg	muscle
10	chr6:72221800-72222200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:72221800-72222600	Flanking Active TSS	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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