Variant report

Variant	rs477066
Chromosome Location	chr18:159281-159282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr18:157998-159457	K562	blood:	n/a	n/a
2	YY1	chr18:159259-159608	K562	blood:	n/a	chr18:159464-159486 chr18:159475-159483 chr18:159474-159486
3	MXI1	chr18:157988-159823	SK-N-SH	brain:	n/a	chr18:158302-158311 chr18:158300-158309 chr18:158302-158311
4	POLR2A	chr18:159015-159579	SK-N-MC	brain:	n/a	n/a
5	TCF7L2	chr18:159183-159383	PANC-1	pancreas:	n/a	n/a
6	SIN3AK20	chr18:158422-159336	K562	blood:	n/a	n/a
7	MAX	chr18:157989-159554	K562	blood:	n/a	chr18:158299-158312 chr18:158300-158310 chr18:158299-158314 chr18:158301-158310 chr18:158300-158309 chr18:158301-158311 chr18:158300-158311 chr18:158299-158312 chr18:158300-158310 chr18:158301-158310 chr18:158299-158312 chr18:158300-158311 chr18:158301-158311 chr18:158300-158311 chr18:158297-158312 chr18:158296-158315 chr18:158301-158310
8	JUN	chr18:157975-160024	K562	blood:	n/a	n/a
9	YY1	chr18:159278-159714	H1-hESC	embryonic stem cell:	n/a	chr18:159464-159486 chr18:159475-159483 chr18:159474-159486
10	POLR2A	chr18:158108-159573	H1-neurons	neurons:	n/a	n/a
11	POLR2A	chr18:158062-159606	GM12878	blood:	n/a	n/a
12	MXI1	chr18:158104-159491	HepG2	liver:	n/a	chr18:158302-158311 chr18:158300-158309 chr18:158302-158311
13	SIN3A	chr18:158185-159648	H1-hESC	embryonic stem cell:	n/a	chr18:158302-158311 chr18:158331-158342 chr18:158300-158309 chr18:159033-159046 chr18:159408-159422
14	POLR2A	chr18:158448-159646	HepG2	liver:	n/a	n/a
15	HCFC1	chr18:157994-159864	Hela-S3	cervix:	n/a	n/a
16	SIN3AK20	chr18:158063-159402	MCF-7	breast:	n/a	n/a
17	POLR2A	chr18:158058-159607	MCF10A-Er-Src	breast:	n/a	n/a
18	MXI1	chr18:157989-159937	IMR90	lung:	n/a	chr18:158302-158311 chr18:158300-158309 chr18:158302-158311
19	YY1	chr18:159264-159664	ECC-1	luminal epithelium:	n/a	chr18:159464-159486 chr18:159475-159483 chr18:159474-159486
20	YY1	chr18:159281-159541	GM12878	blood:	n/a	chr18:159464-159486 chr18:159475-159483 chr18:159474-159486
21	HEY1	chr18:159263-159562	HepG2	liver:	n/a	n/a
22	MYC	chr18:158072-159283	K562	blood:	n/a	chr18:158299-158312 chr18:158300-158310 chr18:158299-158314 chr18:158301-158310 chr18:158300-158309 chr18:158301-158311 chr18:158300-158311 chr18:158299-158312 chr18:158300-158310 chr18:158301-158310 chr18:158299-158312 chr18:158300-158311 chr18:158301-158311 chr18:158300-158311 chr18:158297-158312 chr18:158296-158315 chr18:158301-158310
23	POLR2A	chr18:159278-159542	Hela-S3	cervix:	n/a	n/a
24	SIN3AK20	chr18:159139-159520	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr18:158083-159615	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr18:158082-159689	PBDE	blood:	n/a	n/a
27	POLR2A	chr18:158238-159742	PFSK-1	brain:	n/a	n/a
28	YY1	chr18:159262-159613	SK-N-SH_RA	brain:	n/a	chr18:159464-159486 chr18:159475-159483 chr18:159474-159486
29	POLR2A	chr18:158213-159775	H1-hESC	embryonic stem cell:	n/a	n/a
30	CREB1	chr18:158046-159653	HepG2	liver:	n/a	n/a
31	POLR2A	chr18:158077-159296	K562	blood:	n/a	n/a
32	POLR2A	chr18:159272-159600	GM12891	blood:	n/a	n/a
33	REST	chr18:157913-159606	H1-neurons	neurons:	n/a	chr18:159409-159423 chr18:159033-159046
34	POLR2A	chr18:158130-159623	HepG2	liver:	n/a	n/a
35	POLR2A	chr18:158073-159340	K562	blood:	n/a	n/a
36	POLR2A	chr18:158069-159518	Hela-S3	cervix:	n/a	n/a
37	POLR2A	chr18:158008-159682	HL-60	blood:	n/a	n/a
38	SIN3AK20	chr18:158192-159548	K562	blood:	n/a	n/a
39	YY1	chr18:159240-159653	GM12878	blood:	n/a	chr18:159464-159486 chr18:159475-159483 chr18:159474-159486
40	POLR2A	chr18:158088-159474	GM19193	blood:	n/a	n/a
41	POLR2A	chr18:158066-159453	GM12891	blood:	n/a	n/a
42	BACH1	chr18:158368-159507	H1-hESC	embryonic stem cell:	n/a	n/a
43	YY1	chr18:159228-159650	GM12892	blood:	n/a	chr18:159464-159486 chr18:159475-159483 chr18:159474-159486
44	HEY1	chr18:158121-159613	K562	blood:	n/a	n/a
45	MAFK	chr18:158885-159738	HepG2	liver:	n/a	chr18:159568-159582 chr18:159574-159585 chr18:159565-159585 chr18:159567-159583
46	POLR2A	chr18:158063-159675	HepG2	liver:	n/a	n/a
47	SIN3AK20	chr18:159255-159476	PFSK-1	brain:	n/a	n/a
48	YY1	chr18:159279-159622	HepG2	liver:	n/a	chr18:159464-159486 chr18:159475-159483 chr18:159474-159486
49	POLR2A	chr18:158422-159616	IMR90	lung:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr18:159265-159315	PFSK-1	brain:	n/a
2	chr18:159265-159315	HepG2	liver:	n/a
3	chr18:159265-159315	CMK	blood:	n/a
4	chr18:159265-159315	HAEpiC	amniotic membrane:	n/a
5	chr18:159265-159315	ovcar-3	ovarian:	n/a
6	chr18:159265-159315	NH-A	brain:	n/a
7	chr18:159265-159315	K562	blood:	n/a
8	chr18:159265-159315	SK-N-SH_RA	brain:	n/a
9	chr18:159265-159315	AG09309	skin:	n/a
10	chr18:159265-159315	BE2_C	brain:	n/a
11	chr18:159265-159315	AG10803	skin:	n/a
12	chr18:159265-159315	HNPCEpiC	eye:	n/a
13	chr18:159265-159315	HL-60	blood:	n/a
14	chr18:159265-159315	HUVEC	blood vessel:	n/a
15	chr18:159265-159315	HCPEpiC	choroid plexus:	n/a
16	chr18:159265-159315	HCF	heart:	n/a
17	chr18:159265-159315	Hela-S3	cervix:	n/a
18	chr18:159265-159315	GM06990	blood:	n/a
19	chr18:159265-159315	HEEpiC	esophagus:	n/a
20	chr18:159265-159315	SAEC	small airway:	n/a
21	chr18:159265-159315	MCF10A-Er-Src	breast:	n/a
22	chr18:159265-159315	NT2-D1	testis:	n/a
23	chr18:159265-159315	Caco-2	colon:	n/a
24	chr18:159265-159315	RPTEC	kidney:	n/a
25	chr18:159265-159315	LNCaP	prostate:	n/a
26	chr18:159265-159315	HIPEpiC	eye:	n/a
27	chr18:159265-159315	SK-N-SH	brain:	n/a
28	chr18:159265-159315	GM12891	blood:	n/a
29	chr18:159265-159315	A549	lung:	n/a
30	chr18:159265-159315	Jurkat	blood:	n/a
31	chr18:159265-159315	IMR90	lung:	fetal
32	chr18:159265-159315	HRE	kidney:	n/a
33	chr18:159265-159315	H1-hESC	embryonic stem cell:	embryo
34	chr18:159265-159315	GM12878	blood:	n/a
35	chr18:159265-159315	Hepatocyte	liver:	n/a
36	chr18:159265-159315	AG09319	gingival:	n/a
37	chr18:159265-159315	NHDF-neo	bronchial:	n/a
38	chr18:159265-159315	ProgFib	skin:	n/a
39	chr18:159265-159315	HCT-116	colon:	n/a
40	chr18:159265-159315	NHBE	bronchial:	n/a
41	chr18:159265-159315	T-47D	breast:	n/a
42	chr18:159265-159315	HRCEpiC	kidney:	n/a
43	chr18:159265-159315	AG04450	lung:	fetal
44	chr18:159265-159315	HMEC	breast:	n/a
45	chr18:159265-159315	NB4	blood:	n/a
46	chr18:159265-159315	HEK293	kidney:	embryo
47	chr18:159265-159315	GM19239	blood:	n/a
48	chr18:159265-159315	PrEC	prostate:	n/a
49	chr18:159265-159315	PANC-1	pancreas:	n/a
50	chr18:159265-159315	HRPEpiC	eye:	n/a

No.	Distal block	Cell Line	Cell type
1	chr18:158417..159997-chr18:214475..216956,2	K562	blood:
2	chr18:158012..160007-chr18:265808..268303,2	MCF-7	breast:
3	chr18:157295..159730-chr18:266988..268701,2	MCF-7	breast:

Variant related genes	Relation type
USP14	TF binding region
USP14	CpG island
ENSG00000079134	Chromatin interaction
ENSG00000263884	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12960837	0.90[ASN][1000 genomes]
rs1299113	0.89[ASN][1000 genomes]
rs1784380	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1785049	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2509447	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs471274	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs481077	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs484863	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs489560	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs489577	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs490425	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs513402	0.93[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs513894	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs514003	0.82[EUR][1000 genomes]
rs523239	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs535992	0.83[EUR][1000 genomes]
rs545447	0.92[ASN][1000 genomes]
rs557249	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs577454	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs579219	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs585578	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs599361	0.80[EUR][1000 genomes]
rs600022	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs600220	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs605826	0.84[ASN][1000 genomes]
rs620970	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs621782	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs631343	0.85[ASN][1000 genomes]
rs644438	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs655781	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs663186	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs672856	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7238463	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7241427	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909285	chr18:10001-196829	Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1059917	chr18:11543-175067	Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1059509	chr18:11543-190140	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1064673	chr18:11543-249310	Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1061730	chr18:11543-322183	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv1059645	chr18:11543-326679	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv576227	chr18:52933-322183	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv1064150	chr18:99036-321710	Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv1055303	chr18:112328-304352	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv543527	chr18:112328-304352	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	nsv543530	chr18:112528-932674	Weak transcription Strong transcription Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
12	nsv1067102	chr18:112528-984688	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
13	nsv543531	chr18:112528-984688	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
14	esv3362050	chr18:128001-160214	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv1066441	chr18:136228-249310	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
16	nsv1057029	chr18:141491-356238	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
17	nsv1066995	chr18:141491-415027	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
18	nsv1064735	chr18:141491-483651	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
19	nsv1062680	chr18:141491-549166	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
20	nsv1067218	chr18:141491-603796	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
21	nsv543544	chr18:141491-675519	Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
22	nsv1064998	chr18:141491-1095845	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
23	nsv543545	chr18:141491-1095845	Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
24	nsv1057105	chr18:143546-235928	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
25	nsv531216	chr18:148763-293736	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
26	nsv532441	chr18:148763-1108997	Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
27	nsv530373	chr18:148963-533693	Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
28	esv3406270	chr18:151001-180091	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs477066	USP14	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:158000-159400	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr18:158000-159400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr18:158000-159400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr18:158000-159400	Active TSS	Brain Angular Gyrus	brain
5	chr18:158000-159400	Active TSS	Brain Cingulate Gyrus	brain
6	chr18:158000-159400	Active TSS	Brain Germinal Matrix	brain
7	chr18:158000-159400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr18:158000-159400	Active TSS	Brain Substantia Nigra	brain
9	chr18:158000-159400	Active TSS	Colon Smooth Muscle	Colon
10	chr18:158000-159400	Active TSS	Fetal Brain Female	brain
11	chr18:158000-159400	Active TSS	Fetal Stomach	stomach
12	chr18:158000-159400	Active TSS	Ovary	ovary
13	chr18:158000-159400	Active TSS	Thymus	Thymus
14	chr18:158000-159400	Active TSS	NH-A	brain
15	chr18:158000-159400	Active TSS	NHEK	skin
16	chr18:158000-159400	Active TSS	Osteobl	bone
17	chr18:158000-159600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr18:158000-159600	Active TSS	H9 Cell Line	embryonic stem cell
19	chr18:158000-159600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr18:158000-159600	Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr18:158000-159600	Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr18:158000-159600	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr18:158000-159600	Active TSS	Colonic Mucosa	Colon
24	chr18:158000-159600	Active TSS	Fetal Intestine Large	intestine
25	chr18:158000-159600	Active TSS	Fetal Kidney	kidney
26	chr18:158000-159600	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr18:158000-159600	Active TSS	Left Ventricle	heart
28	chr18:158000-159600	Active TSS	Hela-S3	cervix
29	chr18:158000-159800	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr18:158000-159800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr18:158000-159800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr18:158000-159800	Active TSS	Fetal Intestine Small	intestine
33	chr18:158000-159800	Active TSS	Fetal Muscle Trunk	muscle
34	chr18:158000-159800	Active TSS	HSMMtube	muscle
35	chr18:158000-160000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr18:158000-160000	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr18:158000-160000	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr18:158000-160000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr18:158000-160000	Active TSS	Psoas Muscle	Psoas
40	chr18:158000-160000	Active TSS	HMEC	breast
41	chr18:158000-160000	Active TSS	NHDF-Ad	bronchial
42	chr18:158000-160200	Active TSS	HSMM	muscle
43	chr18:158000-160200	Active TSS	NHLF	lung
44	chr18:158000-160600	Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr18:158000-160600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr18:158200-159400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr18:158200-159400	Active TSS	Aorta	Aorta
48	chr18:158200-159400	Active TSS	Pancreas	Pancrea
49	chr18:158200-159400	Active TSS	Sigmoid Colon	Sigmoid Colon
50	chr18:158200-159400	Active TSS	Small Intestine	intestine

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