Variant report

Variant	rs4771677
Chromosome Location	chr13:111061059-111061060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1999014	1.00[AMR][1000 genomes]
rs1999015	1.00[AMR][1000 genomes]
rs2391826	1.00[AMR][1000 genomes]
rs4773172	1.00[ASW][hapmap]
rs7319219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7338965	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2751128	chr13:111040798-111132490	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3354806	chr13:111059151-111063549	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111050200-111064400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:111050200-111066000	Enhancers	NHDF-Ad	bronchial
3	chr13:111050200-111075200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:111052200-111063400	Weak transcription	Psoas Muscle	Psoas
5	chr13:111053000-111063600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:111054600-111061200	Enhancers	NH-A	brain
7	chr13:111056200-111066000	Enhancers	Lung	lung
8	chr13:111057000-111061200	Enhancers	Fetal Heart	heart
9	chr13:111057400-111061600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr13:111057800-111064800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr13:111057800-111070400	Enhancers	Right Atrium	heart
12	chr13:111058000-111061200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr13:111058000-111066000	Enhancers	HUVEC	blood vessel
14	chr13:111058200-111062200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr13:111058400-111062400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr13:111058400-111062800	Strong transcription	Fetal Intestine Small	intestine
17	chr13:111058600-111061600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr13:111058600-111062000	Genic enhancers	Fetal Muscle Trunk	muscle
19	chr13:111058800-111063600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr13:111058800-111063800	Weak transcription	Small Intestine	intestine
21	chr13:111058800-111064200	Weak transcription	Fetal Intestine Large	intestine
22	chr13:111059000-111063200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr13:111059200-111063600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr13:111059400-111062600	Genic enhancers	Fetal Muscle Leg	muscle
25	chr13:111059400-111063800	Genic enhancers	Fetal Stomach	stomach
26	chr13:111059400-111065200	Enhancers	Spleen	Spleen
27	chr13:111059400-111067000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr13:111059600-111061400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr13:111059600-111061600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr13:111059600-111062000	Genic enhancers	Muscle Satellite Cultured Cells	--
31	chr13:111059600-111064200	Genic enhancers	Osteobl	bone
32	chr13:111059600-111064400	Enhancers	Aorta	Aorta
33	chr13:111059800-111061400	Weak transcription	Pancreas	Pancrea
34	chr13:111059800-111064800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr13:111059800-111065200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr13:111060000-111061200	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr13:111060000-111061200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr13:111060200-111061400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr13:111060200-111061400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr13:111060200-111062400	Weak transcription	Ovary	ovary
41	chr13:111060200-111062600	Weak transcription	Gastric	stomach
42	chr13:111060200-111063400	Weak transcription	Brain Substantia Nigra	brain
43	chr13:111060200-111063600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr13:111060200-111064000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr13:111060200-111064200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr13:111060200-111064200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr13:111060200-111064400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr13:111060200-111064400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr13:111060200-111065200	Enhancers	HMEC	breast
50	chr13:111060200-111065600	Weak transcription	Esophagus	oesophagus

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