Variant report

Variant	rs4773082
Chromosome Location	chr13:110403459-110403460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:110396337..110398183-chr13:110402422..110404262,2	MCF-7	breast:
2	chr13:110399706..110404328-chr13:110411393..110414507,4	K562	blood:
3	chr13:110401184..110404328-chr13:110411393..110413977,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4771644	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4773087	0.83[JPT][hapmap]
rs754204	0.85[CEU][hapmap];0.84[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs8001323	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9521509	0.83[JPT][hapmap]
rs9559639	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9559646	0.85[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv826788	chr13:110381750-110469062	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv826789	chr13:110387268-110473524	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv526943	chr13:110393477-110421884	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv826790	chr13:110395165-110463032	Weak transcription Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv826791	chr13:110397733-110462553	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv826792	chr13:110398678-110462209	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110391200-110404400	Weak transcription	HSMMtube	muscle
2	chr13:110395600-110404000	Weak transcription	Liver	Liver
3	chr13:110396400-110416400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:110396600-110404000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:110396600-110404400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr13:110396600-110404400	Weak transcription	Gastric	stomach
7	chr13:110396600-110407400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr13:110396600-110407400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr13:110396600-110411800	Weak transcription	Fetal Kidney	kidney
10	chr13:110396600-110412200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr13:110396600-110412800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr13:110396600-110417000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr13:110396800-110404400	Weak transcription	Primary T cells from cord blood	blood
14	chr13:110396800-110405800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr13:110396800-110406600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr13:110396800-110411200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr13:110396800-110417000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr13:110397000-110404200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr13:110397000-110404400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:110397000-110404600	Weak transcription	Brain Angular Gyrus	brain
21	chr13:110397000-110405000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr13:110397000-110405400	Weak transcription	Hela-S3	cervix
23	chr13:110397000-110405600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr13:110397000-110406200	Weak transcription	NHDF-Ad	bronchial
25	chr13:110397000-110407400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr13:110397000-110407400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr13:110397000-110407800	Weak transcription	Fetal Thymus	thymus
28	chr13:110397000-110416400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr13:110397000-110428800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr13:110397200-110404400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr13:110397200-110404400	Weak transcription	Brain Germinal Matrix	brain
32	chr13:110397200-110406600	Weak transcription	NH-A	brain
33	chr13:110397200-110407400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr13:110397200-110407800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr13:110397200-110408000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr13:110397200-110411400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr13:110397200-110430400	Weak transcription	NHLF	lung
38	chr13:110397400-110404200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr13:110397400-110404200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr13:110397400-110404200	Weak transcription	HMEC	breast
41	chr13:110397400-110404400	Weak transcription	Adipose Nuclei	Adipose
42	chr13:110397400-110404800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr13:110397400-110405000	Weak transcription	Colon Smooth Muscle	Colon
44	chr13:110397400-110405600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr13:110397400-110405600	Weak transcription	Fetal Brain Male	brain
46	chr13:110397400-110405600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr13:110397400-110406200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr13:110397400-110407200	Weak transcription	Fetal Intestine Small	intestine
49	chr13:110397400-110407400	Weak transcription	Brain Anterior Caudate	brain
50	chr13:110397400-110408000	Weak transcription	Spleen	Spleen

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