Variant report

Variant	rs4773125
Chromosome Location	chr13:110760214-110760215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:110654511..110656415-chr13:110759069..110761693,2	MCF-7	breast:
2	chr13:110443953..110447179-chr13:110758507..110762069,3	MCF-7	breast:
3	chr13:110436205..110441713-chr13:110758837..110762777,7	MCF-7	breast:
4	chr13:110436096..110439350-chr13:110760184..110763012,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185950	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12867444	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4000276	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4773123	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4773124	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8181831	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9515144	0.81[ASN][1000 genomes]
rs9555669	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9559737	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv563095	chr13:110724710-110761521	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv901005	chr13:110733102-110766350	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv515849	chr13:110742197-110761521	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv456111	chr13:110742197-110761521	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv456112	chr13:110742197-110761521	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv456113	chr13:110742197-110761521	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv563096	chr13:110742197-110761521	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv563097	chr13:110742197-110766350	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv456114	chr13:110742919-110761521	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv563098	chr13:110742919-110761521	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv901006	chr13:110748857-110806490	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
12	nsv563099	chr13:110749252-110778894	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv456115	chr13:110756664-110806490	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
14	nsv563100	chr13:110756664-110806490	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
15	esv3392579	chr13:110758851-110763149	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110756400-110761400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr13:110756600-110760800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:110756800-110761200	Weak transcription	NHEK	skin
4	chr13:110757000-110761400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:110757200-110761000	Weak transcription	HMEC	breast
6	chr13:110757200-110761200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr13:110757400-110760800	Weak transcription	Lung	lung
8	chr13:110757800-110761600	Weak transcription	Brain Substantia Nigra	brain
9	chr13:110757800-110761600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr13:110758400-110761800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr13:110758600-110761400	Weak transcription	Placenta	Placenta
12	chr13:110758800-110760400	Enhancers	Liver	Liver
13	chr13:110759200-110761600	Weak transcription	Right Atrium	heart
14	chr13:110759400-110760400	Enhancers	Fetal Stomach	stomach
15	chr13:110759400-110761000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr13:110759400-110761000	Weak transcription	Adipose Nuclei	Adipose
17	chr13:110759400-110761400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr13:110759400-110761400	Weak transcription	Fetal Muscle Leg	muscle
19	chr13:110759400-110761600	Weak transcription	Fetal Lung	lung
20	chr13:110759600-110760600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr13:110759600-110760800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr13:110759600-110761000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr13:110759600-110761200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr13:110759600-110761200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr13:110759600-110761200	Weak transcription	Pancreas	Pancrea
26	chr13:110759600-110761400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr13:110759600-110761400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr13:110759600-110761400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr13:110759600-110761400	Weak transcription	Brain Anterior Caudate	brain
30	chr13:110759600-110761600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr13:110759600-110762000	Weak transcription	Brain Germinal Matrix	brain
32	chr13:110759800-110760800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr13:110759800-110760800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr13:110759800-110760800	Weak transcription	Fetal Heart	heart
35	chr13:110759800-110761000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr13:110759800-110761400	Weak transcription	HSMM	muscle
37	chr13:110760000-110760400	Enhancers	Left Ventricle	heart
38	chr13:110760000-110761000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr13:110760000-110761000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr13:110760000-110761400	Weak transcription	Colon Smooth Muscle	Colon
41	chr13:110760000-110761400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr13:110760000-110762600	Enhancers	Fetal Muscle Trunk	muscle
43	chr13:110760200-110760400	Enhancers	Right Ventricle	heart
44	chr13:110760200-110761000	Enhancers	Dnd41	blood

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