Variant report

Variant	rs4773135
Chromosome Location	chr13:110917931-110917932
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COL4A2-AS2-2	chr13:110917598-110918460	NONHSAT035141

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7984097	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110901000-110919400	Weak transcription	Fetal Brain Male	brain
2	chr13:110904200-110918200	Weak transcription	Pancreas	Pancrea
3	chr13:110911200-110924000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:110911800-110918800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:110912200-110924000	Enhancers	Left Ventricle	heart
6	chr13:110912400-110919600	Enhancers	NHDF-Ad	bronchial
7	chr13:110913400-110920200	Enhancers	Fetal Heart	heart
8	chr13:110914000-110918000	Enhancers	Ovary	ovary
9	chr13:110914000-110918400	Enhancers	Lung	lung
10	chr13:110914000-110922600	Enhancers	Right Atrium	heart
11	chr13:110914200-110918200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr13:110914800-110918400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr13:110914800-110919400	Weak transcription	Esophagus	oesophagus
14	chr13:110915200-110918600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr13:110915200-110920000	Enhancers	HUVEC	blood vessel
16	chr13:110915200-110936200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr13:110915400-110918400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr13:110915400-110919400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr13:110915400-110919800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr13:110915400-110920000	Enhancers	Colon Smooth Muscle	Colon
21	chr13:110915600-110918400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr13:110915600-110918600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr13:110915600-110919000	Enhancers	NHLF	lung
24	chr13:110915600-110935800	Weak transcription	Gastric	stomach
25	chr13:110916200-110918400	Enhancers	NHEK	skin
26	chr13:110916200-110918800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr13:110916200-110921400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr13:110916400-110918000	Enhancers	Fetal Kidney	kidney
29	chr13:110916400-110918200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr13:110916400-110918600	Genic enhancers	Right Ventricle	heart
31	chr13:110916400-110918800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr13:110916400-110919400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr13:110916400-110919800	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr13:110916400-110919800	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr13:110916400-110919800	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr13:110916400-110921000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr13:110916400-110921400	Enhancers	H1 Cell Line	embryonic stem cell
38	chr13:110916400-110921400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr13:110916400-110921400	Enhancers	Spleen	Spleen
40	chr13:110916600-110918200	Weak transcription	Aorta	Aorta
41	chr13:110916600-110918600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr13:110916600-110919600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr13:110916600-110920200	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr13:110916600-110922200	Weak transcription	HSMM	muscle
45	chr13:110916600-110935800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr13:110916800-110924800	Weak transcription	HSMMtube	muscle
47	chr13:110916800-110927800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr13:110917000-110918200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
49	chr13:110917000-110918400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
50	chr13:110917000-110918400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle

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