Variant report

Variant	rs4774314
Chromosome Location	chr15:59156429-59156430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MBD4	chr15:59156376-59157243	HepG2	liver:	n/a	n/a
2	MAX	chr15:59156384-59158233	HepG2	liver:	n/a	chr15:59157169-59157178

Variant related genes	Relation type
ZNF444P1	TF binding region
RNF111	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34231193	0.84[EUR][1000 genomes]
rs442321	0.84[AFR][1000 genomes]
rs472200	0.82[CEU][hapmap]
rs62004762	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs648432	0.93[AFR][1000 genomes]
rs6494041	0.82[CEU][hapmap]
rs650731	1.00[CEU][hapmap]
rs661367	0.82[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
5	nsv1035640	chr15:59105360-59190930	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv904270	chr15:59140329-59238415	Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59067000-59157800	Weak transcription	Hela-S3	cervix
2	chr15:59090200-59156600	Weak transcription	Small Intestine	intestine
3	chr15:59095200-59156800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:59103800-59157000	Weak transcription	Psoas Muscle	Psoas
5	chr15:59104000-59157000	Weak transcription	Esophagus	oesophagus
6	chr15:59104000-59157200	Weak transcription	NHLF	lung
7	chr15:59106000-59156800	Weak transcription	Lung	lung
8	chr15:59106200-59156800	Weak transcription	Ovary	ovary
9	chr15:59106200-59157000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:59106600-59157000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:59111800-59159600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:59120000-59169000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:59126000-59156600	Weak transcription	Right Ventricle	heart
14	chr15:59126200-59157000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:59127200-59156600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:59137200-59156800	Weak transcription	Spleen	Spleen
17	chr15:59138200-59156800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr15:59140600-59156800	Weak transcription	Primary B cells from cord blood	blood
19	chr15:59140600-59156800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr15:59140600-59156800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:59140800-59156800	Weak transcription	Fetal Lung	lung
22	chr15:59141800-59156800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr15:59142600-59156800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr15:59142800-59157000	Weak transcription	Brain Germinal Matrix	brain
25	chr15:59144400-59156600	Weak transcription	Fetal Muscle Leg	muscle
26	chr15:59144400-59156800	Weak transcription	Thymus	Thymus
27	chr15:59144400-59157000	Weak transcription	Aorta	Aorta
28	chr15:59144400-59157000	Weak transcription	Fetal Brain Female	brain
29	chr15:59144400-59157000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr15:59144800-59157000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr15:59145000-59166600	Weak transcription	HSMMtube	muscle
32	chr15:59147000-59156800	Weak transcription	Adipose Nuclei	Adipose
33	chr15:59147200-59156600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:59147200-59156600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:59147200-59156800	Weak transcription	Fetal Thymus	thymus
36	chr15:59147200-59156800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr15:59147200-59169000	Weak transcription	K562	blood
38	chr15:59147400-59156600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:59147400-59156800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr15:59147600-59156600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:59147600-59156800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr15:59147600-59157000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr15:59147600-59157000	Weak transcription	NHDF-Ad	bronchial
44	chr15:59147600-59174600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr15:59147800-59156600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:59147800-59156600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr15:59147800-59156800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:59147800-59156800	Weak transcription	Placenta	Placenta
49	chr15:59147800-59157400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr15:59148000-59156800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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