Variant report

Variant	rs4774318
Chromosome Location	chr15:59276032-59276033
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59275289..59278080-chr15:59278378..59280374,4	K562	blood:
2	chr15:59273387..59276935-chr15:59397350..59400234,3	K562	blood:

Variant related genes	Relation type
ENSG00000157456	Chromatin interaction
ENSG00000157450	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10444803	0.82[AMR][1000 genomes]
rs10444841	0.82[AMR][1000 genomes]
rs11855896	0.82[AMR][1000 genomes]
rs11858479	0.81[AMR][1000 genomes]
rs12900291	0.81[AMR][1000 genomes]
rs12911441	0.81[AMR][1000 genomes]
rs35124643	0.81[AMR][1000 genomes]
rs4465553	0.82[AMR][1000 genomes]
rs4600408	0.81[AMR][1000 genomes]
rs4775106	0.81[AMR][1000 genomes]
rs55671218	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7167050	0.81[AMR][1000 genomes]
rs8024549	0.81[AMR][1000 genomes]
rs8028502	0.82[AMR][1000 genomes]
rs8028828	0.82[AMR][1000 genomes]
rs8031213	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59265600-59279200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:59268600-59279000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:59272200-59279200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:59272400-59279200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:59272400-59279200	Weak transcription	NHEK	skin
6	chr15:59273800-59279200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:59274200-59278800	Weak transcription	Hela-S3	cervix
8	chr15:59274200-59279200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:59274200-59279200	Weak transcription	Adipose Nuclei	Adipose
10	chr15:59274400-59277600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:59274400-59279000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr15:59274400-59279000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:59274400-59279000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr15:59274400-59279200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr15:59274400-59279200	Weak transcription	Primary B cells from cord blood	blood
16	chr15:59274400-59279200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr15:59274400-59279200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr15:59274400-59279200	Weak transcription	Liver	Liver
19	chr15:59274400-59279200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr15:59274400-59279200	Weak transcription	NHDF-Ad	bronchial
21	chr15:59274600-59278800	Weak transcription	Dnd41	blood
22	chr15:59274600-59279000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:59274600-59279000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:59274600-59279200	Weak transcription	Primary T cells from cord blood	blood
25	chr15:59274600-59279200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr15:59274600-59279200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr15:59274600-59279200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr15:59274600-59279200	Weak transcription	Fetal Thymus	thymus
29	chr15:59274800-59279000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:59274800-59279000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:59274800-59279000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:59274800-59279200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:59275200-59276400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:59275200-59279000	Weak transcription	GM12878-XiMat	blood
35	chr15:59275800-59279200	Enhancers	Monocytes-CD14+_RO01746	blood

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