Variant report

Variant	rs4774548
Chromosome Location	chr15:50135344-50135345
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11070724	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11070727	0.85[ASN][1000 genomes]
rs11070728	0.86[ASN][1000 genomes]
rs11070729	0.87[ASN][1000 genomes]
rs11070731	0.89[ASN][1000 genomes]
rs11634432	0.85[ASN][1000 genomes]
rs11634466	0.85[ASN][1000 genomes]
rs11634538	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11635995	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11855340	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11858914	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12438404	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12440711	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12442186	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12442880	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12904515	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12909601	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12911756	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12912869	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1395882	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1395883	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1395885	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1395886	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1507584	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1507585	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1507586	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1588122	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1828041	0.82[ASN][1000 genomes]
rs1828042	0.82[ASN][1000 genomes]
rs1848282	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1848283	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1848284	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2102383	0.81[ASN][1000 genomes]
rs2413967	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2413968	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2413969	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2413970	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2413971	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2452535	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2452537	0.82[ASN][1000 genomes]
rs2452538	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2456840	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2456841	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2456842	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2660966	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2899438	0.87[ASN][1000 genomes]
rs34614239	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34696884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35816674	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35861473	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4404008	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4526969	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4551980	0.85[ASN][1000 genomes]
rs4774546	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4774547	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7182178	0.85[ASN][1000 genomes]
rs7182911	0.87[ASN][1000 genomes]
rs8039234	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs873107	0.81[ASN][1000 genomes]
rs937169	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv833003	chr15:50100372-50273309	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50124800-50139200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:50130000-50138200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:50130800-50138400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:50131000-50137800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
5	chr15:50131000-50138200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
6	chr15:50131600-50138000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr15:50132400-50141200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr15:50134400-50140200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:50134600-50136200	Weak transcription	Placenta	Placenta
10	chr15:50134600-50139600	Weak transcription	Ovary	ovary
11	chr15:50134800-50136200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr15:50134800-50136400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:50134800-50140200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:50135000-50136000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr15:50135000-50136000	Weak transcription	Fetal Intestine Large	intestine
16	chr15:50135000-50136600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:50135000-50137800	Weak transcription	Spleen	Spleen
18	chr15:50135000-50139000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:50135200-50136200	Weak transcription	Adipose Nuclei	Adipose
20	chr15:50135200-50137400	Enhancers	Fetal Intestine Small	intestine
21	chr15:50135200-50181400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links