Variant report

Variant	rs4774567
Chromosome Location	chr15:50698289-50698290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2414041	1.00[AMR][1000 genomes]
rs2414048	1.00[AMR][1000 genomes]
rs9989268	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
4	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
5	nsv524613	chr15:50656449-50868779	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50683800-50703800	Weak transcription	K562	blood
2	chr15:50686800-50699400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:50697000-50698600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:50697000-50699200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr15:50697200-50698400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:50697200-50698400	Enhancers	Fetal Thymus	thymus
7	chr15:50697200-50698400	Enhancers	Thymus	Thymus
8	chr15:50697200-50698600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr15:50697200-50699400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr15:50697200-50699600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr15:50697600-50698400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:50697600-50698400	Enhancers	Primary hematopoietic stem cells	blood
13	chr15:50697600-50699800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr15:50697800-50698400	Enhancers	Dnd41	blood
15	chr15:50698000-50698400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:50698200-50715800	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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