Variant report

Variant	rs4774822
Chromosome Location	chr15:56067671-56067672
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56065566..56070771-chr15:56079598..56082669,5	MCF-7	breast:
2	chr15:56067671..56070376-chr17:56744893..56747884,2	MCF-7	breast:
3	chr15:56066228..56069099-chr15:56088720..56091536,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12915565	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17238381	0.81[CEU][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6493815	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv833017	chr15:55965957-56157912	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv3366380	chr15:56003224-56141650	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv1052495	chr15:56013617-56102164	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4774822	AP4E1	cis	cerebellum	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56057400-56069400	Weak transcription	Right Atrium	heart
2	chr15:56057400-56078800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:56065600-56068200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:56065800-56068200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:56066200-56068200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:56066400-56068200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr15:56066600-56068600	Enhancers	Placenta	Placenta
8	chr15:56066800-56068000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:56067200-56067800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:56067200-56068000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:56067200-56068000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr15:56067200-56068000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr15:56067200-56068000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:56067200-56068000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:56067200-56068000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr15:56067200-56068000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:56067200-56068000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:56067200-56068000	Enhancers	HMEC	breast
19	chr15:56067200-56068200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr15:56067200-56068200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr15:56067200-56068200	Flanking Active TSS	Hela-S3	cervix
22	chr15:56067200-56078400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr15:56067400-56068000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:56067400-56068000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr15:56067400-56068200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr15:56067400-56068200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:56067600-56068000	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr15:56067600-56068000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:56067600-56068000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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