Variant report

Variant	rs4774925
Chromosome Location	chr15:57604402-57604403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:57604185..57606036-chr15:57609151..57611286,2	K562	blood:
2	chr15:57602461..57607778-chr15:57612282..57619576,11	K562	blood:
3	chr15:57597621..57600563-chr15:57604167..57606534,3	K562	blood:
4	chr15:57600919..57606103-chr15:57620754..57624822,5	K562	blood:
5	chr15:57599033..57602011-chr15:57602301..57604910,2	MCF-7	breast:
6	chr15:57598904..57601336-chr15:57602570..57606633,5	K562	blood:
7	chr15:57564291..57566333-chr15:57603914..57606752,2	K562	blood:
8	chr15:57603147..57604831-chr15:57626994..57629042,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000260870	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11071311	0.82[CEU][hapmap]
rs12904145	0.84[CEU][hapmap]
rs17820184	0.85[CEU][hapmap]
rs2544132	0.85[CEU][hapmap]
rs4774924	0.82[CEU][hapmap]
rs4774927	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4774925	GNB5	cis	cerebellum	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57599400-57604600	Weak transcription	Right Ventricle	heart
2	chr15:57599400-57605000	Weak transcription	Fetal Brain Female	brain
3	chr15:57599400-57612800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr15:57599600-57604600	Weak transcription	Fetal Thymus	thymus
5	chr15:57599600-57604600	Weak transcription	Left Ventricle	heart
6	chr15:57599600-57604600	Weak transcription	Pancreas	Pancrea
7	chr15:57599600-57604600	Weak transcription	Psoas Muscle	Psoas
8	chr15:57599600-57604600	Weak transcription	Right Atrium	heart
9	chr15:57599600-57604800	Weak transcription	Fetal Brain Male	brain
10	chr15:57599600-57612400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:57599600-57612800	Weak transcription	GM12878-XiMat	blood
12	chr15:57599600-57614200	Weak transcription	Small Intestine	intestine
13	chr15:57599600-57617800	Weak transcription	Spleen	Spleen
14	chr15:57600200-57605000	Weak transcription	Fetal Kidney	kidney
15	chr15:57601400-57605200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr15:57602000-57605600	Enhancers	Fetal Stomach	stomach
17	chr15:57602000-57605800	Enhancers	Fetal Muscle Trunk	muscle
18	chr15:57602000-57606800	Enhancers	Fetal Intestine Large	intestine
19	chr15:57602400-57604800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:57602400-57605000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr15:57602400-57606800	Enhancers	Fetal Intestine Small	intestine
22	chr15:57602400-57607200	Enhancers	Fetal Muscle Leg	muscle
23	chr15:57602600-57604600	Weak transcription	Primary B cells from peripheral blood	blood
24	chr15:57602800-57617000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr15:57603000-57605600	Enhancers	Stomach Mucosa	stomach
26	chr15:57603200-57605000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr15:57603200-57611400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:57603400-57604600	Weak transcription	Placenta	Placenta
29	chr15:57603800-57605600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr15:57604000-57604600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr15:57604000-57604800	Weak transcription	Gastric	stomach
32	chr15:57604000-57604800	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr15:57604000-57605000	Weak transcription	Colonic Mucosa	Colon
34	chr15:57604200-57604600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr15:57604200-57605600	Enhancers	Fetal Lung	lung
36	chr15:57604200-57612800	Weak transcription	Primary B cells from cord blood	blood
37	chr15:57604400-57604800	Active TSS	Stomach Smooth Muscle	stomach
38	chr15:57604400-57605400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr15:57604400-57605600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:57604400-57605600	Enhancers	Fetal Heart	heart
41	chr15:57604400-57605600	Flanking Active TSS	HepG2	liver
42	chr15:57604400-57605600	Flanking Active TSS	K562	blood

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