Variant report

Variant	rs4774979
Chromosome Location	chr15:57927389-57927390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57834554..57835358-chr15:57927382..57928092,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10162772	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs11071339	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs11629719	0.96[CEU][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1346124	0.84[EUR][1000 genomes]
rs1425948	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1425949	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs17240055	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1834488	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2251762	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs2433196	0.96[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2433197	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs2433198	0.81[JPT][hapmap]
rs2554026	0.96[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2733604	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs34270510	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36082771	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4578589	0.89[EUR][1000 genomes]
rs6493939	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs7169211	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7176042	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7181013	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs8034146	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs9302201	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs9806740	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs986868	0.85[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv94840	chr15:57922185-57931412	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57894400-57938200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr15:57900600-57941600	Weak transcription	Colonic Mucosa	Colon
3	chr15:57904400-57935200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:57904600-57936400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:57905000-57940800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:57912200-57939200	Weak transcription	Placenta	Placenta
7	chr15:57912800-57931600	Weak transcription	Spleen	Spleen
8	chr15:57915600-57927400	Strong transcription	Fetal Intestine Small	intestine
9	chr15:57916600-57927600	Strong transcription	Fetal Intestine Large	intestine
10	chr15:57917600-57935400	Weak transcription	Stomach Mucosa	stomach
11	chr15:57918400-57927800	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:57919400-57946800	Weak transcription	Fetal Lung	lung
13	chr15:57919400-57959400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr15:57920000-57931600	Weak transcription	Aorta	Aorta
15	chr15:57921600-57927400	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr15:57922000-57928000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr15:57923400-57928400	Genic enhancers	Fetal Heart	heart
18	chr15:57923600-57927400	Genic enhancers	Right Ventricle	heart
19	chr15:57923600-57939200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:57924000-57927400	Strong transcription	Esophagus	oesophagus
21	chr15:57924000-57938200	Strong transcription	Adipose Nuclei	Adipose
22	chr15:57924200-57934400	Weak transcription	Fetal Muscle Leg	muscle
23	chr15:57924600-57929800	Weak transcription	Small Intestine	intestine
24	chr15:57925400-57939200	Weak transcription	HUVEC	blood vessel
25	chr15:57925600-57929800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr15:57925800-57927400	Genic enhancers	Lung	lung
27	chr15:57925800-57928200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr15:57926000-57936000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:57926200-57927400	Enhancers	Psoas Muscle	Psoas
30	chr15:57926200-57927800	Genic enhancers	Left Ventricle	heart
31	chr15:57926200-57927800	Enhancers	Right Atrium	heart
32	chr15:57926200-57928800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr15:57926200-57931200	Weak transcription	Fetal Stomach	stomach
34	chr15:57926200-57933600	Weak transcription	Liver	Liver
35	chr15:57926400-57927400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:57926400-57927600	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr15:57926600-57928200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr15:57926800-57929600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr15:57926800-57929800	Weak transcription	Gastric	stomach
40	chr15:57927000-57927800	Enhancers	Pancreas	Pancrea
41	chr15:57927000-57928200	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr15:57927000-57928400	Enhancers	Stomach Smooth Muscle	stomach
43	chr15:57927000-57928800	Enhancers	Fetal Brain Female	brain
44	chr15:57927000-57929000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:57927000-57931600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr15:57927200-57928600	Enhancers	Ovary	ovary

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