Variant report

Variant	rs4775125
Chromosome Location	chr15:59492915-59492916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59487827..59489393-chr15:59490801..59493761,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1032178	0.99[EUR][1000 genomes]
rs1032179	0.99[EUR][1000 genomes]
rs1032181	0.99[EUR][1000 genomes]
rs1032182	0.86[CHD][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap]
rs10851644	0.85[CHD][hapmap]
rs11631844	0.93[EUR][1000 genomes]
rs11633119	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11633205	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12440243	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12440901	0.83[GIH][hapmap]
rs12908949	0.96[EUR][1000 genomes]
rs12912558	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12915115	0.81[EUR][1000 genomes]
rs17302219	0.95[EUR][1000 genomes]
rs2029212	0.99[EUR][1000 genomes]
rs2171286	0.99[EUR][1000 genomes]
rs2242322	0.89[EUR][1000 genomes]
rs2242323	0.90[EUR][1000 genomes]
rs2899644	0.95[EUR][1000 genomes]
rs35227552	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3794496	0.89[EUR][1000 genomes]
rs3794498	0.89[EUR][1000 genomes]
rs3809528	0.85[GIH][hapmap]
rs3825937	0.83[CHD][hapmap]
rs4775120	0.91[EUR][1000 genomes]
rs4775123	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58583822	0.91[EUR][1000 genomes]
rs62004105	0.92[EUR][1000 genomes]
rs62004107	0.96[EUR][1000 genomes]
rs7170182	0.87[GIH][hapmap]
rs7178908	0.81[EUR][1000 genomes]
rs7181609	0.88[EUR][1000 genomes]
rs8041615	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1035868	chr15:59402426-59530594	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv833027	chr15:59474806-59608544	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59464400-59496800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:59467800-59523200	Weak transcription	Fetal Brain Female	brain
3	chr15:59468200-59528600	Weak transcription	Stomach Mucosa	stomach
4	chr15:59468600-59521400	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr15:59475200-59503200	Strong transcription	Liver	Liver
6	chr15:59475800-59498200	Strong transcription	Primary B cells from peripheral blood	blood
7	chr15:59475800-59517800	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:59477000-59498000	Strong transcription	GM12878-XiMat	blood
9	chr15:59480200-59499200	Weak transcription	Fetal Lung	lung
10	chr15:59480200-59507200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:59480600-59496400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:59480600-59507600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:59481400-59496000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr15:59482800-59499400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:59483200-59514000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:59484200-59499400	Weak transcription	Fetal Kidney	kidney
17	chr15:59485400-59515400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:59485600-59505800	Weak transcription	Brain Germinal Matrix	brain
19	chr15:59485600-59521200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:59486800-59494000	Weak transcription	Brain Anterior Caudate	brain
21	chr15:59487200-59494000	Weak transcription	Brain Angular Gyrus	brain
22	chr15:59487200-59494400	Weak transcription	Fetal Thymus	thymus
23	chr15:59487200-59502600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr15:59487400-59493800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr15:59487400-59494000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr15:59487600-59494000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:59487600-59498000	Weak transcription	Right Ventricle	heart
28	chr15:59487600-59499400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:59487800-59493000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:59487800-59493000	Weak transcription	HepG2	liver
31	chr15:59487800-59493400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr15:59487800-59494000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:59487800-59494000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr15:59487800-59495800	Weak transcription	Colonic Mucosa	Colon
35	chr15:59487800-59495800	Weak transcription	Pancreas	Pancrea
36	chr15:59487800-59495800	Weak transcription	Spleen	Spleen
37	chr15:59487800-59496400	Weak transcription	Psoas Muscle	Psoas
38	chr15:59487800-59498000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr15:59487800-59524400	Weak transcription	Small Intestine	intestine
40	chr15:59488000-59493800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr15:59489600-59503800	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:59489800-59493200	Strong transcription	Stomach Smooth Muscle	stomach
43	chr15:59489800-59501200	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr15:59489800-59512600	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr15:59489800-59515600	Weak transcription	Right Atrium	heart
46	chr15:59490000-59501200	Strong transcription	Fetal Muscle Leg	muscle
47	chr15:59490000-59501200	Strong transcription	Fetal Stomach	stomach
48	chr15:59490200-59502600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr15:59490200-59510800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:59490400-59494000	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links