Variant report

Variant	rs4775135
Chromosome Location	chr15:59517236-59517237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11634548	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11638386	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12438740	0.96[CEU][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2230155	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2306779	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2306780	0.96[CEU][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35481817	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3794491	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3794492	0.96[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3794493	0.92[CEU][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3816813	0.85[CEU][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4775131	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7167638	0.90[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73422960	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1035868	chr15:59402426-59530594	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv833027	chr15:59474806-59608544	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv904272	chr15:59500577-59549018	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv977071	chr15:59509537-59519089	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59467800-59523200	Weak transcription	Fetal Brain Female	brain
2	chr15:59468200-59528600	Weak transcription	Stomach Mucosa	stomach
3	chr15:59468600-59521400	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr15:59475800-59517800	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:59485600-59521200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:59487800-59524400	Weak transcription	Small Intestine	intestine
7	chr15:59492000-59521600	Strong transcription	Rectal Mucosa Donor 31	rectum
8	chr15:59493200-59523200	Strong transcription	Hela-S3	cervix
9	chr15:59496800-59522000	Strong transcription	NHEK	skin
10	chr15:59497000-59524800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:59497200-59517600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:59498800-59522000	Strong transcription	GM12878-XiMat	blood
13	chr15:59500000-59517600	Weak transcription	Fetal Lung	lung
14	chr15:59500000-59524400	Weak transcription	Right Ventricle	heart
15	chr15:59500600-59524600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:59501200-59521400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:59501200-59523400	Weak transcription	Ovary	ovary
18	chr15:59501200-59525600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:59502800-59525800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr15:59503800-59518000	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:59504000-59520200	Strong transcription	Liver	Liver
22	chr15:59504800-59517800	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr15:59505800-59518000	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr15:59506800-59517400	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr15:59511400-59549200	Weak transcription	Colonic Mucosa	Colon
26	chr15:59511600-59517400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:59512200-59521600	Strong transcription	Fetal Intestine Small	intestine
28	chr15:59512400-59518400	Strong transcription	Duodenum Mucosa	Duodenum
29	chr15:59512600-59520000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr15:59513400-59517600	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr15:59513400-59517800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:59513400-59520200	Strong transcription	Primary B cells from peripheral blood	blood
33	chr15:59513400-59521600	Strong transcription	Fetal Intestine Large	intestine
34	chr15:59513600-59517600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:59513600-59517600	Strong transcription	HepG2	liver
36	chr15:59513800-59517400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr15:59513800-59517800	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr15:59514200-59517800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:59514800-59521400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:59514800-59521400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:59514800-59524200	Weak transcription	Colon Smooth Muscle	Colon
42	chr15:59515000-59517600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:59515000-59517600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr15:59515000-59517800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:59515000-59517800	Genic enhancers	Left Ventricle	heart
46	chr15:59515000-59519200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:59515000-59524400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:59515200-59517600	Enhancers	Spleen	Spleen
49	chr15:59515200-59521400	Strong transcription	Osteobl	bone
50	chr15:59515400-59523800	Weak transcription	Rectal Smooth Muscle	rectum

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