Variant report

Variant	rs4776018
Chromosome Location	chr15:52498457-52498458
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50387437..50389948-chr15:52496988..52498573,2	K562	blood:
2	chr15:52486663..52491950-chr15:52497424..52502756,7	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16964751	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16964760	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16964764	0.87[AMR][1000 genomes]
rs17540546	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17540734	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17612637	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17612796	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2231289	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2414134	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs35581121	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41277704	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41277706	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41277712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4776006	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4776019	0.82[AMR][1000 genomes]
rs4776020	1.00[CEU][hapmap]
rs62016465	0.87[AMR][1000 genomes]
rs62016466	0.87[AMR][1000 genomes]
rs6493536	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6493537	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7168334	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7177057	0.87[EUR][1000 genomes]
rs7181736	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73402856	0.82[EUR][1000 genomes]
rs73402857	0.90[EUR][1000 genomes]
rs74015635	0.80[EUR][1000 genomes]
rs8024846	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8024892	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471244	chr15:52305463-52511465	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1054372	chr15:52369078-52579464	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv542387	chr15:52369078-52579464	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv833005	chr15:52389869-52541330	Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv904220	chr15:52485024-52526507	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52473200-52513600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr15:52473600-52512400	Weak transcription	Primary B cells from cord blood	blood
3	chr15:52475800-52505600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:52479800-52532800	Weak transcription	Brain Angular Gyrus	brain
5	chr15:52484200-52498600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:52484200-52503200	Weak transcription	Lung	lung
7	chr15:52484400-52503800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:52486000-52505800	Weak transcription	Psoas Muscle	Psoas
9	chr15:52487400-52505200	Weak transcription	Thymus	Thymus
10	chr15:52488600-52509800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:52488800-52505600	Weak transcription	Fetal Kidney	kidney
12	chr15:52489200-52520800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:52489200-52523800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr15:52490400-52503000	Weak transcription	Brain Hippocampus Middle	brain
15	chr15:52494600-52499200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:52495400-52500600	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:52495600-52519000	Strong transcription	HepG2	liver
18	chr15:52495800-52498600	Weak transcription	Right Atrium	heart
19	chr15:52495800-52499200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr15:52496000-52498600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:52496000-52499000	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr15:52496000-52500800	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr15:52496000-52505000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:52496200-52499200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:52496200-52500200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:52496200-52501600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:52496200-52505400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:52496800-52498800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:52497200-52498800	Weak transcription	Aorta	Aorta
30	chr15:52497200-52505200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr15:52497400-52498800	Weak transcription	Left Ventricle	heart
32	chr15:52497400-52499200	Weak transcription	A549	lung
33	chr15:52497400-52499800	Weak transcription	Brain Anterior Caudate	brain
34	chr15:52497400-52501000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr15:52497400-52503000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:52497400-52505000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr15:52497400-52509400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr15:52497400-52510400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:52497400-52514600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr15:52497400-52535600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr15:52497600-52498600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr15:52497600-52498800	Weak transcription	Liver	Liver
43	chr15:52497600-52498800	Weak transcription	Fetal Stomach	stomach
44	chr15:52497600-52500000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr15:52497600-52501600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr15:52497600-52502800	Weak transcription	Adipose Nuclei	Adipose
47	chr15:52497600-52503200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr15:52497600-52503200	Weak transcription	Esophagus	oesophagus
49	chr15:52497600-52503200	Weak transcription	Fetal Intestine Small	intestine
50	chr15:52497600-52503200	Weak transcription	Fetal Muscle Leg	muscle

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