Variant report

Variant	rs4776036
Chromosome Location	chr15:52601394-52601395
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52599470..52602451-chr15:52610830..52612789,2	K562	blood:
2	chr15:52590879..52593445-chr15:52599970..52603838,3	MCF-7	breast:
3	chr15:52600034..52602516-chr15:52612985..52614649,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAPK6-8	chr15:52600575-52601909	NONHSAT043927

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8040558	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52588200-52602200	Weak transcription	HSMM	muscle
2	chr15:52588400-52602800	Weak transcription	Aorta	Aorta
3	chr15:52591200-52602400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:52593600-52608600	Weak transcription	Fetal Brain Male	brain
5	chr15:52595200-52601600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr15:52595200-52605600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr15:52595400-52605600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:52595400-52610800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr15:52595400-52614200	Weak transcription	Fetal Lung	lung
10	chr15:52595600-52603400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:52595600-52609800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:52595800-52601600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:52595800-52602000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:52595800-52628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:52596000-52601600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:52596000-52601600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr15:52596000-52602200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr15:52596000-52603000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:52596000-52604800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:52596000-52605000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:52596000-52605000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:52596000-52608400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr15:52596000-52608800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:52596000-52611000	Weak transcription	Fetal Stomach	stomach
25	chr15:52596200-52601400	Weak transcription	Fetal Brain Female	brain
26	chr15:52596200-52602800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:52596200-52623600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr15:52596400-52605000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:52596400-52608600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr15:52597600-52601400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:52597600-52608600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr15:52597800-52629600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr15:52597800-52643400	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr15:52598200-52602800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:52598400-52608400	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:52598800-52601600	Weak transcription	HSMMtube	muscle
37	chr15:52598800-52602800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:52598800-52604400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr15:52599000-52601800	Weak transcription	Osteobl	bone
40	chr15:52599000-52605200	Weak transcription	HMEC	breast
41	chr15:52599000-52605200	Weak transcription	NHEK	skin
42	chr15:52599200-52602800	Weak transcription	Brain Substantia Nigra	brain
43	chr15:52599200-52605000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr15:52599200-52611000	Weak transcription	NHLF	lung
45	chr15:52599400-52601800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:52599400-52601800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr15:52599400-52611000	Weak transcription	Fetal Thymus	thymus
48	chr15:52599400-52611000	Weak transcription	Thymus	Thymus
49	chr15:52599600-52601400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr15:52599600-52601600	Weak transcription	Stomach Smooth Muscle	stomach

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