Variant report

Variant	rs4777437
Chromosome Location	chr15:71971429-71971430
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16953738	0.81[AMR][1000 genomes]
rs3759814	1.00[AFR][1000 genomes]
rs4777442	0.81[AMR][1000 genomes]
rs4777444	0.81[AMR][1000 genomes]
rs4777468	1.00[AFR][1000 genomes]
rs58430868	1.00[AFR][1000 genomes]
rs872472	0.81[AMR][1000 genomes]
rs872475	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv833050	chr15:71848619-71980892	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:71951400-71971600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:71966400-71973200	Enhancers	Fetal Heart	heart
3	chr15:71966800-71972000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:71967200-71976000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:71967200-71984000	Weak transcription	Lung	lung
6	chr15:71968000-71973400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:71968400-71971800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:71968400-71972000	Weak transcription	Spleen	Spleen
9	chr15:71969000-71971800	Enhancers	Hela-S3	cervix
10	chr15:71969000-71972800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr15:71969000-71972800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:71969200-71974200	Enhancers	HepG2	liver
13	chr15:71969400-71972200	Enhancers	Fetal Muscle Leg	muscle
14	chr15:71969400-71972800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr15:71969400-71973800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:71969400-71974000	Enhancers	Stomach Mucosa	stomach
17	chr15:71969600-71971600	Weak transcription	Right Atrium	heart
18	chr15:71969600-71982600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr15:71969800-71972000	Weak transcription	NH-A	brain
20	chr15:71969800-71972000	Weak transcription	Osteobl	bone
21	chr15:71969800-71972600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:71969800-71972600	Enhancers	Liver	Liver
23	chr15:71969800-71973200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:71970000-71971600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:71970000-71971800	Weak transcription	HUVEC	blood vessel
26	chr15:71970000-71972400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr15:71970000-71972400	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr15:71970000-71972600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:71970000-71983400	Weak transcription	Aorta	Aorta
30	chr15:71970200-71972200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr15:71970200-71972200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr15:71970400-71971600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:71970400-71971800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr15:71970400-71971800	Weak transcription	HMEC	breast
35	chr15:71970400-71972000	Weak transcription	Fetal Lung	lung
36	chr15:71970400-71972200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr15:71970400-71972200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr15:71970600-71971600	Weak transcription	Placenta	Placenta
39	chr15:71970600-71971800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr15:71970600-71971800	Weak transcription	Gastric	stomach
41	chr15:71970600-71972000	Weak transcription	Adipose Nuclei	Adipose
42	chr15:71970600-71972000	Weak transcription	Right Ventricle	heart
43	chr15:71970600-71972800	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr15:71970600-71975600	Weak transcription	HSMM	muscle
45	chr15:71970600-71984000	Weak transcription	Fetal Kidney	kidney
46	chr15:71970800-71971600	Weak transcription	Left Ventricle	heart
47	chr15:71970800-71971800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr15:71970800-71972000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr15:71970800-71972200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:71970800-71972600	Enhancers	Duodenum Mucosa	Duodenum

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