Variant report

Variant	rs4777500
Chromosome Location	chr15:72626346-72626347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11072351	0.82[EUR][1000 genomes]
rs12591338	0.81[CHB][hapmap]
rs16956634	0.82[CHB][hapmap]
rs2959930	1.00[CHB][hapmap];0.91[CHD][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs4776589	0.82[CHB][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs8192386	0.82[CHB][hapmap]
rs8192431	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4777500	MYO9A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72613000-72631600	Weak transcription	Right Atrium	heart
2	chr15:72613000-72636000	Weak transcription	Right Ventricle	heart
3	chr15:72613000-72636400	Weak transcription	Gastric	stomach
4	chr15:72613000-72637000	Weak transcription	Colonic Mucosa	Colon
5	chr15:72613200-72630600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:72613200-72630600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr15:72613200-72630800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:72613200-72631600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:72613200-72633000	Weak transcription	Thymus	Thymus
10	chr15:72613200-72633600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:72613200-72634200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:72613200-72635600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:72613200-72635800	Weak transcription	Pancreas	Pancrea
14	chr15:72613200-72636000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr15:72613200-72636200	Weak transcription	HSMMtube	muscle
16	chr15:72613200-72651000	Weak transcription	Stomach Mucosa	stomach
17	chr15:72613200-72666800	Weak transcription	Fetal Heart	heart
18	chr15:72613400-72627400	Weak transcription	NHDF-Ad	bronchial
19	chr15:72613400-72629200	Weak transcription	Brain Anterior Caudate	brain
20	chr15:72613400-72630000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:72613400-72630000	Weak transcription	Brain Angular Gyrus	brain
22	chr15:72613400-72630200	Weak transcription	Fetal Brain Male	brain
23	chr15:72613400-72631000	Weak transcription	Hela-S3	cervix
24	chr15:72613400-72632200	Weak transcription	NH-A	brain
25	chr15:72613400-72633600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr15:72613400-72633600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:72613400-72633600	Weak transcription	Fetal Thymus	thymus
28	chr15:72613400-72633600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr15:72613400-72634000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr15:72613400-72634000	Weak transcription	Spleen	Spleen
31	chr15:72613400-72634400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:72613400-72635800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:72613400-72636600	Weak transcription	HSMM	muscle
34	chr15:72613400-72638000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr15:72613400-72667600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr15:72613800-72634000	Weak transcription	Fetal Brain Female	brain
37	chr15:72613800-72636400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr15:72614000-72630800	Weak transcription	Ovary	ovary
39	chr15:72614000-72636200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr15:72614000-72636400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr15:72614000-72642400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:72616600-72627200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr15:72616800-72633600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr15:72617000-72633400	Weak transcription	GM12878-XiMat	blood
45	chr15:72617200-72630000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr15:72617600-72630200	Weak transcription	Primary T cells from cord blood	blood
47	chr15:72618800-72630200	Weak transcription	Fetal Lung	lung
48	chr15:72618800-72636800	Weak transcription	Fetal Kidney	kidney
49	chr15:72619000-72630000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr15:72619400-72630200	Weak transcription	Primary hematopoietic stem cells	blood

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