Variant report

Variant	rs4777963
Chromosome Location	chr15:92886405-92886406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11074063	0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11634097	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs16946777	0.90[EUR][1000 genomes]
rs17521083	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs58243974	0.90[EUR][1000 genomes]
rs62019829	0.87[EUR][1000 genomes]
rs6496926	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7176079	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7181854	0.84[EUR][1000 genomes]
rs7183115	0.95[EUR][1000 genomes]
rs8027941	0.84[EUR][1000 genomes]
rs9302358	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1041582	chr15:92879844-92910306	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv869844	chr15:92881526-92935448	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92884200-92886800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr15:92885400-92886600	Weak transcription	Fetal Brain Male	brain
3	chr15:92885600-92889200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:92885800-92886800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:92885800-92887000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr15:92885800-92891800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:92886000-92886600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr15:92886000-92887200	Enhancers	Brain Germinal Matrix	brain
9	chr15:92886000-92888000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr15:92886000-92888800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:92886200-92886600	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:92886200-92888800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
13	chr15:92886400-92887000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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