Variant report

Variant	rs4778061
Chromosome Location	chr15:93501398-93501399
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93501140..93503509-chr15:93512727..93514419,2	K562	blood:
2	chr15:93500970..93503092-chr15:93504292..93507134,2	MCF-7	breast:
3	chr15:93350530..93353326-chr15:93501115..93503024,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction
ENSG00000258922	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10152428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11074124	1.00[CHB][hapmap]
rs12900800	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs1406712	1.00[CHB][hapmap]
rs16947284	1.00[CHB][hapmap]
rs17610095	1.00[CHB][hapmap]
rs17610312	1.00[CHB][hapmap]
rs17610452	1.00[CHB][hapmap]
rs2272458	1.00[CHB][hapmap]
rs2272463	1.00[CHB][hapmap]
rs4778060	1.00[CHB][hapmap]
rs6497014	1.00[CHB][hapmap]
rs7166161	1.00[CHB][hapmap]
rs7167859	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7174740	1.00[CHB][hapmap]
rs7180629	1.00[CHB][hapmap]
rs8028865	1.00[CHB][hapmap]
rs8032603	1.00[CHB][hapmap]
rs8041241	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
3	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
4	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv530847	chr15:93444024-93555676	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
6	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93474800-93501800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr15:93478600-93503200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:93493000-93508600	Strong transcription	Hela-S3	cervix
4	chr15:93493200-93503800	Strong transcription	Brain Substantia Nigra	brain
5	chr15:93493200-93504400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:93493200-93504800	Strong transcription	Fetal Kidney	kidney
7	chr15:93493200-93508200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:93493200-93512200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:93493200-93533000	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:93493200-93536000	Strong transcription	HSMM	muscle
11	chr15:93493200-93571000	Strong transcription	Dnd41	blood
12	chr15:93493200-93571200	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr15:93493400-93501400	Strong transcription	HSMMtube	muscle
14	chr15:93493400-93501600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr15:93493400-93501600	Strong transcription	Brain Hippocampus Middle	brain
16	chr15:93493400-93501800	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr15:93493400-93503000	Strong transcription	Sigmoid Colon	Sigmoid Colon
18	chr15:93493400-93504800	Strong transcription	Brain Anterior Caudate	brain
19	chr15:93493400-93505000	Strong transcription	Fetal Muscle Trunk	muscle
20	chr15:93493400-93505800	Strong transcription	Fetal Lung	lung
21	chr15:93493400-93508200	Strong transcription	Primary B cells from cord blood	blood
22	chr15:93493400-93508400	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:93493400-93511800	Strong transcription	Adipose Nuclei	Adipose
24	chr15:93493400-93511800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr15:93493400-93548000	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr15:93493400-93568600	Strong transcription	Liver	Liver
27	chr15:93493400-93569600	Strong transcription	Placenta	Placenta
28	chr15:93493400-93571000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr15:93493400-93571000	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr15:93493600-93504800	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr15:93493600-93510600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr15:93493600-93521600	Strong transcription	Osteobl	bone
33	chr15:93493600-93523400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:93493600-93571400	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr15:93493800-93501600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr15:93493800-93502600	Strong transcription	NHLF	lung
37	chr15:93493800-93505000	Strong transcription	Stomach Smooth Muscle	stomach
38	chr15:93493800-93508200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr15:93493800-93508200	Strong transcription	Duodenum Mucosa	Duodenum
40	chr15:93493800-93522400	Strong transcription	Primary B cells from peripheral blood	blood
41	chr15:93493800-93532600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:93493800-93561400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr15:93493800-93571400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr15:93494000-93501600	Strong transcription	Colon Smooth Muscle	Colon
45	chr15:93494000-93502600	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr15:93494000-93502800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr15:93494000-93503400	Strong transcription	Thymus	Thymus
48	chr15:93494000-93503800	Strong transcription	HMEC	breast
49	chr15:93494000-93504000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:93494000-93505600	Strong transcription	GM12878-XiMat	blood

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