Variant report

Variant	rs4779154
Chromosome Location	chr15:79245465-79245466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11632238	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4779156	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4779154	CTSH	cis	Muscle Skeletal	GTEx
rs4779154	CTSH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79238600-79252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:79244000-79263400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:79244000-79288000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:79244200-79249000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:79244200-79253400	Weak transcription	Brain Angular Gyrus	brain
6	chr15:79244400-79247600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:79244600-79245600	Weak transcription	Psoas Muscle	Psoas
8	chr15:79244600-79245600	Enhancers	HepG2	liver
9	chr15:79244600-79249000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:79244600-79249000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:79244600-79249200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:79244800-79249800	Weak transcription	Right Atrium	heart
13	chr15:79245000-79245600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:79245400-79245600	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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