Variant report

Variant	rs4779532
Chromosome Location	chr15:31772434-31772435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31753081..31754904-chr15:31769113..31772729,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2338685	0.81[ASN][1000 genomes]
rs4779533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4779873	1.00[ASW][hapmap]
rs6493659	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv903844	chr15:31736091-31781988	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1046271	chr15:31741255-31795961	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv1803983	chr15:31760986-31776503	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4779532	OTUD7A	cis	multi-tissue	Pritchard

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31758200-31774800	Weak transcription	Gastric	stomach
2	chr15:31758200-31775400	Weak transcription	Pancreas	Pancrea
3	chr15:31765400-31773000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:31765400-31773000	Weak transcription	Fetal Heart	heart
5	chr15:31765600-31775200	Weak transcription	Brain Anterior Caudate	brain
6	chr15:31765600-31779200	Weak transcription	Brain Angular Gyrus	brain
7	chr15:31765800-31775400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:31766000-31776400	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:31766200-31773600	Weak transcription	Small Intestine	intestine
10	chr15:31766200-31775000	Weak transcription	Left Ventricle	heart
11	chr15:31766600-31772600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:31766600-31772600	Weak transcription	Fetal Thymus	thymus
13	chr15:31766600-31772800	Weak transcription	Spleen	Spleen
14	chr15:31766800-31772600	Weak transcription	Primary T cells from cord blood	blood
15	chr15:31766800-31774200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:31767200-31774200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr15:31767800-31772600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr15:31768000-31772600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr15:31768000-31772600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr15:31768000-31773400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:31768200-31772600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr15:31768200-31772800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr15:31768400-31774800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr15:31769000-31772600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr15:31769000-31775200	Weak transcription	Right Atrium	heart
26	chr15:31769000-31776400	Weak transcription	Brain Substantia Nigra	brain
27	chr15:31770800-31772600	Enhancers	Fetal Lung	lung
28	chr15:31770800-31773200	Enhancers	Fetal Brain Male	brain
29	chr15:31771600-31772600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr15:31772000-31773000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:31772200-31775000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:31772200-31775200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:31772400-31773000	Enhancers	Fetal Brain Female	brain
34	chr15:31772400-31774400	Bivalent Enhancer	Thymus	Thymus

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