Variant report

Variant	rs4779857
Chromosome Location	chr15:31599916-31599917
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11633005	0.98[ASN][1000 genomes]
rs7178168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026624	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
11	nsv456747	chr15:31537496-31637996	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv568772	chr15:31537496-31637996	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	esv1839818	chr15:31594828-31637996	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31589400-31601800	Enhancers	Fetal Muscle Leg	muscle
2	chr15:31590400-31600600	Enhancers	Brain Cingulate Gyrus	brain
3	chr15:31590800-31600600	Enhancers	Brain Substantia Nigra	brain
4	chr15:31591400-31600600	Enhancers	Brain Anterior Caudate	brain
5	chr15:31591600-31600600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr15:31591800-31601400	Enhancers	Fetal Brain Male	brain
7	chr15:31592400-31601600	Enhancers	Spleen	Spleen
8	chr15:31592400-31602800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:31592800-31601800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr15:31593000-31601200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:31593200-31602800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:31594200-31602800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:31594400-31600600	Enhancers	Stomach Mucosa	stomach
14	chr15:31594600-31603000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr15:31595000-31601400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:31596000-31600800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr15:31596200-31600400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:31596600-31600600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr15:31596600-31600800	Weak transcription	Fetal Heart	heart
20	chr15:31596800-31600600	Weak transcription	Right Atrium	heart
21	chr15:31597000-31600800	Enhancers	HepG2	liver
22	chr15:31597000-31601800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr15:31597200-31601400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:31597400-31600200	Enhancers	Left Ventricle	heart
25	chr15:31597400-31600400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:31597400-31601000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr15:31597600-31600000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr15:31597600-31600400	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr15:31597800-31600200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr15:31598200-31600000	Flanking Active TSS	Brain Germinal Matrix	brain
31	chr15:31598200-31600200	Enhancers	Right Ventricle	heart
32	chr15:31598400-31600800	Enhancers	H9 Cell Line	embryonic stem cell
33	chr15:31598400-31601600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
34	chr15:31598800-31601000	Enhancers	Brain Hippocampus Middle	brain
35	chr15:31598800-31601400	Enhancers	GM12878-XiMat	blood
36	chr15:31598800-31601600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:31598800-31601600	Enhancers	Primary B cells from peripheral blood	blood
38	chr15:31598800-31601600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:31599000-31601200	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr15:31599000-31601600	Flanking Active TSS	Fetal Thymus	thymus
41	chr15:31599000-31603000	Enhancers	Primary T cells from cord blood	blood
42	chr15:31599200-31600200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
43	chr15:31599200-31600600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr15:31599200-31601000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:31599200-31601000	Enhancers	Fetal Brain Female	brain
46	chr15:31599200-31601800	Enhancers	Primary B cells from cord blood	blood
47	chr15:31599200-31602000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
48	chr15:31599400-31600400	Flanking Active TSS	Thymus	Thymus
49	chr15:31599400-31600600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
50	chr15:31599400-31601600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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