Variant report

Variant	rs4780163
Chromosome Location	chr15:34007410-34007411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11858976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12591509	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12592052	1.00[CEU][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12594824	1.00[CEU][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes]
rs16957657	0.84[JPT][hapmap]
rs16957666	0.84[JPT][hapmap]
rs16957745	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16973185	1.00[MEX][hapmap]
rs4779634	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4779635	1.00[CEU][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4779636	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4779637	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4780157	0.88[CHB][hapmap];0.84[JPT][hapmap];0.85[TSI][hapmap]
rs4780158	1.00[CEU][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4780159	1.00[CEU][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4780160	1.00[CEU][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4780161	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4780166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61356371	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61564527	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6495218	0.84[JPT][hapmap];0.85[TSI][hapmap]
rs6495219	0.90[EUR][1000 genomes]
rs7166099	0.84[JPT][hapmap]
rs7166503	0.84[JPT][hapmap]
rs73377337	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73379326	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73379329	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73379330	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73379342	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8026542	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8028058	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8029002	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8029607	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8033768	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8042177	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3328115	chr15:34003360-34007758	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33993000-34034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:33993000-34034600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:33993600-34016400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:34002600-34015800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:34003000-34023600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:34003200-34007800	Weak transcription	Aorta	Aorta
7	chr15:34003200-34013200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:34003200-34014800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr15:34003200-34015600	Weak transcription	Brain Anterior Caudate	brain
10	chr15:34003400-34018400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:34004000-34015000	Weak transcription	Fetal Muscle Leg	muscle
12	chr15:34004600-34017400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:34005800-34013400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:34006400-34008200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links