Variant report

Variant	rs4780170
Chromosome Location	chr15:34026502-34026503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11638307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2288604	0.81[GIH][hapmap];0.89[TSI][hapmap]
rs2288606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4383110	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs4780168	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62012615	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161952	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8036740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8037246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8037593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8042036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33993000-34034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:33993000-34034600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:34008400-34031000	Weak transcription	Aorta	Aorta
4	chr15:34015200-34030000	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:34017200-34030200	Weak transcription	Fetal Stomach	stomach
6	chr15:34018800-34030200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:34019400-34030200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:34019800-34030200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:34019800-34034200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr15:34021000-34031000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr15:34023400-34030000	Weak transcription	Brain Substantia Nigra	brain
12	chr15:34024200-34030200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:34024200-34034800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:34025200-34030400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr15:34025400-34032200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:34025400-34035200	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:34026000-34030200	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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