Variant report

Variant	rs478620
Chromosome Location	chr12:31770670-31770671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs11051486	0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11051497	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1150944	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1150951	1.00[CEU][hapmap]
rs1150952	1.00[CEU][hapmap]
rs1150956	1.00[CEU][hapmap]
rs1150957	1.00[CEU][hapmap]
rs1150959	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1150960	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1150961	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs12302576	1.00[CEU][hapmap]
rs12305966	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs1259215	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1259237	1.00[CEU][hapmap]
rs1259358	1.00[CEU][hapmap]
rs1259387	1.00[CEU][hapmap]
rs1259406	1.00[CEU][hapmap]
rs1259408	1.00[CEU][hapmap]
rs1259421	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1259424	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1259425	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs1267631	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1267686	1.00[CEU][hapmap]
rs1267688	1.00[CEU][hapmap]
rs1267689	1.00[CEU][hapmap]
rs1533704	0.95[EUR][1000 genomes]
rs1623868	0.95[EUR][1000 genomes]
rs1677142	1.00[EUR][1000 genomes]
rs1677155	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1677156	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1677172	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1677188	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1677190	1.00[CEU][hapmap]
rs1677215	0.95[EUR][1000 genomes]
rs1716207	0.91[ASN][1000 genomes]
rs1716213	0.95[EUR][1000 genomes]
rs2447707	0.93[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs2604050	0.95[EUR][1000 genomes]
rs2617179	1.00[CEU][hapmap]
rs2617186	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2617187	0.95[EUR][1000 genomes]
rs2617192	1.00[CEU][hapmap]
rs2625881	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2625882	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2625884	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2679486	0.93[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2679488	1.00[CEU][hapmap]
rs2679493	1.00[CEU][hapmap]
rs2682682	1.00[CEU][hapmap]
rs2682683	1.00[CEU][hapmap]
rs474909	0.86[ASN][1000 genomes]
rs476864	0.91[ASN][1000 genomes]
rs477758	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs509500	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs515731	0.83[AFR][1000 genomes]
rs529303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs538400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs538430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs539102	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs541856	0.92[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs560239	0.89[ASW][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56244356	0.84[EUR][1000 genomes]
rs569482	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs570329	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs708207	1.00[CEU][hapmap]
rs7302818	1.00[CEU][hapmap]
rs7313598	0.87[AMR][1000 genomes]
rs793147	1.00[CEU][hapmap]
rs793178	1.00[CEU][hapmap]
rs793183	1.00[CEU][hapmap]
rs793188	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7962852	0.85[AMR][1000 genomes]
rs811088	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs973510	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041877	chr12:31009451-31809254	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv541440	chr12:31009451-31809254	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	esv2760267	chr12:31626732-31909908	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv898965	chr12:31631819-31771689	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv832365	chr12:31642811-31808532	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv983305	chr12:31767612-31773026	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31762800-31771600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links