Variant report

Variant	rs4790904
Chromosome Location	chr17:64779154-64779155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:64777646..64779622-chr17:64783568..64785407,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057876	chr17:64401469-64802341	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv543407	chr17:64401469-64802341	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv575899	chr17:64759588-64790510	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv948778	chr17:64759588-65082019	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:64720600-64786800	Weak transcription	Fetal Thymus	thymus
2	chr17:64722600-64782400	Weak transcription	Colonic Mucosa	Colon
3	chr17:64722600-64791400	Weak transcription	Stomach Mucosa	stomach
4	chr17:64738800-64800600	Weak transcription	Small Intestine	intestine
5	chr17:64744200-64783000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr17:64746000-64787200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr17:64747600-64785200	Weak transcription	Right Ventricle	heart
8	chr17:64748200-64783000	Weak transcription	Placenta	Placenta
9	chr17:64750200-64782800	Weak transcription	K562	blood
10	chr17:64751600-64780800	Weak transcription	Lung	lung
11	chr17:64752000-64783800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr17:64761200-64783800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr17:64766200-64783600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr17:64767000-64783000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr17:64767800-64783200	Weak transcription	Adipose Nuclei	Adipose
16	chr17:64768200-64792800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr17:64768800-64793800	Strong transcription	Primary T cells from cord blood	blood
18	chr17:64769800-64787200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr17:64770600-64784200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr17:64770600-64786000	Weak transcription	Left Ventricle	heart
21	chr17:64770800-64803800	Weak transcription	Esophagus	oesophagus
22	chr17:64771000-64783000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr17:64771000-64783800	Weak transcription	NHDF-Ad	bronchial
24	chr17:64771200-64782400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr17:64771200-64787600	Weak transcription	Aorta	Aorta
26	chr17:64772000-64781400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr17:64772000-64782800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr17:64772000-64782800	Weak transcription	Ovary	ovary
29	chr17:64772000-64783800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr17:64772000-64785000	Weak transcription	Gastric	stomach
31	chr17:64772400-64782400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr17:64772400-64783400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr17:64772600-64782600	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr17:64772800-64782400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr17:64773200-64780000	Weak transcription	Spleen	Spleen
36	chr17:64773600-64782800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr17:64773600-64782800	Weak transcription	A549	lung
38	chr17:64773600-64783000	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr17:64773800-64779800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr17:64774000-64780200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr17:64774000-64783000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr17:64774000-64785400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr17:64774200-64780600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr17:64774200-64782400	Weak transcription	Brain Anterior Caudate	brain
45	chr17:64774200-64782800	Weak transcription	Colon Smooth Muscle	Colon
46	chr17:64774200-64782800	Weak transcription	NH-A	brain
47	chr17:64774200-64783000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr17:64774200-64783000	Weak transcription	Brain Substantia Nigra	brain
49	chr17:64774200-64783200	Weak transcription	HSMM	muscle
50	chr17:64774200-64784600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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