Variant report

Variant	rs4795078
Chromosome Location	chr17:33847314-33847315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11870756	0.96[ASN][1000 genomes]
rs12450474	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs4796091	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219413	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7221374	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7223043	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8068906	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8069288	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv519981	chr17:33841737-33864479	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv574754	chr17:33841737-33881631	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33835400-33849600	Weak transcription	Spleen	Spleen
2	chr17:33842800-33848200	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr17:33843200-33852200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr17:33846000-33848200	Genic enhancers	Primary T cells fromperipheralblood	blood
5	chr17:33846000-33848200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr17:33846000-33848200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr17:33846000-33848600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr17:33846200-33847400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr17:33846200-33849600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr17:33846400-33852000	Enhancers	Primary T cells from cord blood	blood
11	chr17:33846600-33847600	Bivalent Enhancer	Fetal Lung	lung
12	chr17:33846600-33849200	Genic enhancers	Dnd41	blood
13	chr17:33846800-33847400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr17:33846800-33847400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
15	chr17:33846800-33848400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr17:33846800-33851600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr17:33847000-33847600	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr17:33847000-33848400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr17:33847000-33848400	Weak transcription	HMEC	breast
20	chr17:33847000-33848600	Weak transcription	NHEK	skin
21	chr17:33847000-33849200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr17:33847200-33847400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr17:33847200-33847400	Bivalent Enhancer	Stomach Mucosa	stomach
24	chr17:33847200-33847800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr17:33847200-33848200	Weak transcription	GM12878-XiMat	blood
26	chr17:33847200-33848600	Enhancers	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links