Variant report

Variant	rs4797338
Chromosome Location	chr18:8901428-8901429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1108112	1.00[AFR][1000 genomes]
rs17408774	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17486397	1.00[AFR][1000 genomes]
rs4133048	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4420597	0.95[EUR][1000 genomes]
rs4797335	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4797336	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4797337	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4797349	1.00[AFR][1000 genomes]
rs4798694	1.00[AFR][1000 genomes]
rs4798695	1.00[AFR][1000 genomes]
rs4798698	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4798699	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4798702	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4798711	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4798712	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4798713	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4798714	1.00[EUR][1000 genomes]
rs4798715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv833584	chr18:8728616-8904213	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8891800-8903600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:8900000-8901600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr18:8900600-8901600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr18:8900600-8901600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:8901000-8912200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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