Variant report

Variant	rs4797403
Chromosome Location	chr18:10146577-10146578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1005930	0.81[EUR][1000 genomes]
rs1005931	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909368	chr18:10142323-10272979	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1059110	chr18:10142983-10596012	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:10140200-10150600	Weak transcription	Spleen	Spleen
2	chr18:10140600-10150600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:10141600-10150200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:10141800-10150800	Weak transcription	Right Ventricle	heart
5	chr18:10142000-10150600	Weak transcription	Gastric	stomach
6	chr18:10144400-10146600	Weak transcription	Fetal Stomach	stomach
7	chr18:10144400-10146600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr18:10145800-10146600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr18:10146400-10146600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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