Variant report

Variant	rs4797755
Chromosome Location	chr18:13259433-13259434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1613375	1.00[AMR][1000 genomes]
rs4239310	1.00[AMR][1000 genomes]
rs478502	1.00[AMR][1000 genomes]
rs4797734	1.00[AMR][1000 genomes]
rs482642	1.00[AMR][1000 genomes]
rs486976	1.00[AMR][1000 genomes]
rs543201	1.00[AMR][1000 genomes]
rs575250	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13223800-13259800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr18:13224000-13259800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr18:13224400-13259800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr18:13233000-13260200	Weak transcription	Colonic Mucosa	Colon
5	chr18:13243200-13260200	Weak transcription	Aorta	Aorta
6	chr18:13243600-13278200	Weak transcription	Dnd41	blood
7	chr18:13248400-13259800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr18:13253000-13267800	Weak transcription	Gastric	stomach
9	chr18:13253200-13259800	Weak transcription	Brain Substantia Nigra	brain
10	chr18:13253200-13260000	Weak transcription	Brain Angular Gyrus	brain
11	chr18:13254200-13259800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr18:13254200-13260200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr18:13254600-13259800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr18:13254600-13259800	Weak transcription	Small Intestine	intestine
15	chr18:13256200-13262400	Enhancers	Brain Anterior Caudate	brain
16	chr18:13256800-13268400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr18:13257600-13259800	Weak transcription	Brain Germinal Matrix	brain
18	chr18:13258600-13259800	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr18:13258600-13262200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr18:13258600-13262400	Enhancers	Fetal Heart	heart
21	chr18:13258600-13268600	Enhancers	Right Ventricle	heart
22	chr18:13258800-13260400	Enhancers	HUVEC	blood vessel
23	chr18:13258800-13260800	Enhancers	Adipose Nuclei	Adipose
24	chr18:13258800-13261200	Enhancers	Psoas Muscle	Psoas
25	chr18:13258800-13261800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr18:13258800-13262000	Enhancers	Brain Cingulate Gyrus	brain
27	chr18:13258800-13262000	Enhancers	Fetal Muscle Leg	muscle
28	chr18:13258800-13262200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr18:13258800-13262200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr18:13258800-13262200	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr18:13258800-13262200	Enhancers	Left Ventricle	heart
32	chr18:13258800-13262400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr18:13258800-13262400	Enhancers	Colon Smooth Muscle	Colon
34	chr18:13258800-13262400	Enhancers	Fetal Lung	lung
35	chr18:13258800-13262400	Enhancers	Placenta	Placenta
36	chr18:13258800-13262400	Enhancers	Spleen	Spleen
37	chr18:13258800-13262400	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr18:13259000-13260200	Enhancers	Stomach Smooth Muscle	stomach
39	chr18:13259000-13260400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr18:13259000-13260800	Enhancers	Liver	Liver
41	chr18:13259000-13261600	Genic enhancers	Thymus	Thymus
42	chr18:13259000-13261800	Enhancers	Primary T cells from cord blood	blood
43	chr18:13259000-13262000	Enhancers	Fetal Stomach	stomach
44	chr18:13259000-13262200	Enhancers	Brain Hippocampus Middle	brain
45	chr18:13259000-13262200	Enhancers	Right Atrium	heart
46	chr18:13259200-13259600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr18:13259200-13259600	Weak transcription	Fetal Brain Female	brain
48	chr18:13259200-13259600	Weak transcription	Pancreas	Pancrea
49	chr18:13259200-13261200	Enhancers	Fetal Thymus	thymus
50	chr18:13259200-13262000	Weak transcription	H1 Cell Line	embryonic stem cell

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